Functional clusters
Information
- Type InterPro
- Description SRC2/BAP, C2 domain
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Arabidopsis lyrata | scaffold_7 | 5 | CH_aly_201 | 4 | 6 | 0.0000000395682 |
| Brassica carinata | Contig74 | 5 | CH_bca_1148 | 3 | 3 | 0.0000222828 |
| Brassica carinata | ChrB04 | 5 | CH_bca_2060 | 3 | 7 | 0.000778465 |
| Brassica napus | A08 | 5 | CH_bna_1174 | 3 | 5 | 0.000215136 |
| Brassica napus | C07 | 5 | CH_bna_874 | 3 | 3 | 0.0000215323 |
| Brassica oleracea | C7 | 5 | CH_bol_705 | 3 | 7 | 0.000277798 |
| Brassica oleracea | C8 | 5 | CH_bol_706 | 3 | 7 | 0.000277798 |
| Brassica rapa | A08 | 5 | CH_bra_356 | 3 | 4 | 0.0000603066 |
| Camellia sinensis var. sinensis | Chr6 | 5 | CH_camsi_977 | 3 | 7 | 0.0000617586 |
| Cannabis sativa | NC_044371.1 | 5 | CH_cansat_307 | 3 | 4 | 0.0000073972 |
| Coffea canephora | chr9 | 5 | CH_ccan_672 | 2 | 2 | 0.000579211 |
| Carya illinoinensis | Chr01 | 5 | CH_cil_248 | 4 | 4 | 0.00000000218624 |
| Citrullus lanatus | CG_Chr05 | 5 | CH_cla_378 | 2 | 2 | 0.000887115 |
| Capsella rubella | scaffold_7 | 5 | CH_cru_567 | 3 | 8 | 0.000304726 |
| Cucumis sativus L. | chr3 | 5 | CH_csa_258 | 3 | 4 | 0.00000501603 |
| Davidia involucrata | GWHABJS00000002 | 5 | CH_din_61 | 7 | 10 | 1.31187e-16 |
| Erigeron canadensis | Conyza_canadensis_scaffold:1 | 5 | CH_eca_381 | 3 | 4 | 0.00000265744 |
| Eucalyptus grandis | Chr05 | 5 | CH_egr_249 | 7 | 10 | 4.49166e-16 |
| Eucalyptus grandis | Chr08 | 5 | CH_egr_977 | 3 | 3 | 0.0000168332 |
| Erythranthe guttata | scaffold_6 | 5 | CH_egut_418 | 3 | 3 | 0.000012248 |
| Eutrema salsugineum | scaffold_1 | 5 | CH_esa_39 | 7 | 9 | 6.42514e-17 |
| Glycine max | Gm07 | 5 | CH_gma_143 | 5 | 6 | 0.0000000000259781 |
| Glycine max | Gm03 | 5 | CH_gma_90 | 6 | 8 | 0.0000000000000666941 |
| Helianthus annuus | HanXRQChr03 | 5 | CH_han_723 | 3 | 4 | 0.0000158629 |
| Hydrangea macrophylla | Hma1.2p1_0009F.1 | 5 | CH_hma_208 | 3 | 3 | 0.00000673812 |
| Lotus japonicus | chr3 | 5 | CH_lja_558 | 3 | 11 | 0.000574203 |
| Lonicera japonica | GWHAAZE00000002 | 5 | CH_lonja_516 | 3 | 3 | 0.000000887686 |
| Magnolia biondii | Chr12 | 5 | CH_mbi_423 | 4 | 12 | 0.000000169993 |
| Malus domestica | Chr07 | 5 | CH_mdo_309 | 4 | 4 | 0.00000000334977 |
| Nelumbo nucifera | chr4 | 5 | CH_nnu_332 | 3 | 4 | 0.0000158653 |
| Physcomitrium patens | Chr15 | 5 | CH_ppa_94 | 3 | 3 | 0.00000545709 |
| Rhododendron simsii | chr02 | 5 | CH_rsi_216 | 6 | 14 | 0.0000000000133349 |
| Rhododendron simsii | chr07 | 5 | CH_rsi_379 | 4 | 5 | 0.0000000509652 |
| Salvia bowleyana | GWHASIU00000001 | 5 | CH_sbo_348 | 4 | 11 | 0.000000988177 |
| Salvia bowleyana | GWHASIU00000005 | 5 | CH_sbo_78 | 9 | 32 | 9.47975e-19 |
| Salix brachista | GWHAAZH00000014 | 5 | CH_sbr_361 | 3 | 3 | 0.00000577168 |
| Sechium edule | LG12 | 5 | CH_sed_235 | 3 | 3 | 0.00000347383 |
| Sequoiadendron giganteum | chr9 | 5 | CH_sgi_1188 | 3 | 3 | 0.00000042718 |
| Schrenkiella parvula | ch7-4 | 5 | CH_spa_7 | 8 | 9 | 1.08237e-20 |
| Tripterygium wilfordii | NC_052243.1 | 5 | CH_twi_271 | 3 | 3 | 0.00000620091 |
| Tripterygium wilfordii | NC_052239.1 | 5 | CH_twi_272 | 3 | 3 | 0.00000620091 |
| Vaccinium macrocarpon | chr4_Vaccinium_macrocarpon_Stevens_v1 | 5 | CH_vma_321 | 3 | 3 | 0.00000589355 |
| Vaccinium macrocarpon | chr7_Vaccinium_macrocarpon_Stevens_v1 | 5 | CH_vma_322 | 3 | 3 | 0.00000589355 |
| Arabidopsis lyrata | scaffold_7 | 6 | CH_aly_201 | 4 | 6 | 0.0000000395682 |
| Brassica carinata | Contig74 | 6 | CH_bca_1148 | 3 | 3 | 0.0000222828 |
| Brassica carinata | ChrB04 | 6 | CH_bca_2060 | 3 | 7 | 0.000778465 |
| Brassica napus | A08 | 6 | CH_bna_1174 | 3 | 5 | 0.000215136 |
| Brassica napus | C07 | 6 | CH_bna_874 | 3 | 3 | 0.0000215323 |
| Brassica oleracea | C7 | 6 | CH_bol_705 | 3 | 7 | 0.000277798 |
| Brassica oleracea | C8 | 6 | CH_bol_706 | 3 | 7 | 0.000277798 |
| Brassica rapa | A08 | 6 | CH_bra_356 | 3 | 4 | 0.0000603066 |
| Camellia sinensis var. sinensis | Chr6 | 6 | CH_camsi_977 | 3 | 7 | 0.0000617586 |
| Cannabis sativa | NC_044371.1 | 6 | CH_cansat_307 | 3 | 4 | 0.0000073972 |
| Coffea canephora | chr9 | 6 | CH_ccan_672 | 2 | 2 | 0.000579211 |
| Carya illinoinensis | Chr01 | 6 | CH_cil_248 | 4 | 4 | 0.00000000218624 |
| Citrullus lanatus | CG_Chr05 | 6 | CH_cla_378 | 2 | 2 | 0.000887115 |
| Capsella rubella | scaffold_7 | 6 | CH_cru_567 | 3 | 8 | 0.000304726 |
| Cucumis sativus L. | chr3 | 6 | CH_csa_258 | 3 | 4 | 0.00000501603 |
| Davidia involucrata | GWHABJS00000002 | 6 | CH_din_61 | 7 | 10 | 1.31187e-16 |
| Erigeron canadensis | Conyza_canadensis_scaffold:1 | 6 | CH_eca_381 | 3 | 4 | 0.00000265744 |
| Eucalyptus grandis | Chr05 | 6 | CH_egr_249 | 7 | 10 | 4.49166e-16 |
| Eucalyptus grandis | Chr08 | 6 | CH_egr_977 | 3 | 3 | 0.0000168332 |
| Erythranthe guttata | scaffold_6 | 6 | CH_egut_418 | 3 | 3 | 0.000012248 |
| Eutrema salsugineum | scaffold_1 | 6 | CH_esa_39 | 7 | 9 | 6.42514e-17 |
| Glycine max | Gm07 | 6 | CH_gma_143 | 5 | 6 | 0.0000000000259781 |
| Glycine max | Gm03 | 6 | CH_gma_90 | 6 | 8 | 0.0000000000000666941 |
| Helianthus annuus | HanXRQChr03 | 6 | CH_han_723 | 3 | 4 | 0.0000158629 |
| Hydrangea macrophylla | Hma1.2p1_0009F.1 | 6 | CH_hma_208 | 3 | 3 | 0.00000673812 |
| Lotus japonicus | chr3 | 6 | CH_lja_558 | 3 | 11 | 0.000574203 |
| Lonicera japonica | GWHAAZE00000002 | 6 | CH_lonja_516 | 3 | 3 | 0.000000887686 |
| Magnolia biondii | Chr12 | 6 | CH_mbi_423 | 4 | 12 | 0.000000169993 |
| Malus domestica | Chr07 | 6 | CH_mdo_309 | 4 | 4 | 0.00000000334977 |
| Nelumbo nucifera | chr4 | 6 | CH_nnu_332 | 3 | 4 | 0.0000158653 |
| Physcomitrium patens | Chr15 | 6 | CH_ppa_94 | 3 | 3 | 0.00000545709 |
| Rhododendron simsii | chr02 | 6 | CH_rsi_216 | 6 | 14 | 0.0000000000133349 |
| Rhododendron simsii | chr07 | 6 | CH_rsi_379 | 4 | 5 | 0.0000000509652 |
| Salvia bowleyana | GWHASIU00000001 | 6 | CH_sbo_348 | 4 | 11 | 0.000000988177 |
| Salvia bowleyana | GWHASIU00000005 | 6 | CH_sbo_78 | 9 | 32 | 9.47975e-19 |
| Salix brachista | GWHAAZH00000014 | 6 | CH_sbr_361 | 3 | 3 | 0.00000577168 |
| Sechium edule | LG12 | 6 | CH_sed_235 | 3 | 3 | 0.00000347383 |
| Sequoiadendron giganteum | chr9 | 6 | CH_sgi_1188 | 3 | 3 | 0.00000042718 |
| Schrenkiella parvula | ch7-4 | 6 | CH_spa_7 | 8 | 9 | 1.08237e-20 |
| Tripterygium wilfordii | NC_052243.1 | 6 | CH_twi_271 | 3 | 3 | 0.00000620091 |
| Tripterygium wilfordii | NC_052239.1 | 6 | CH_twi_272 | 3 | 3 | 0.00000620091 |
| Vaccinium macrocarpon | chr4_Vaccinium_macrocarpon_Stevens_v1 | 6 | CH_vma_321 | 3 | 3 | 0.00000589355 |
| Vaccinium macrocarpon | chr7_Vaccinium_macrocarpon_Stevens_v1 | 6 | CH_vma_322 | 3 | 3 | 0.00000589355 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |