Functional clusters
Information
- Type InterPro
- Description ABC transporter C family, six-transmembrane helical domain 1
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Acer truncatum | chr10 | 5 | CH_acertr_141 | 4 | 4 | 0.000000000520337 |
| Amaranthus hybridus | AmaHy_arrow1_Scaffold_7 | 5 | CH_amhyb_173 | 3 | 3 | 0.00000867295 |
| Aquilegia oxysepala | CHR07 | 5 | CH_aox_262 | 3 | 3 | 0.0000109989 |
| Arabidopsis thaliana | Chr1 | 5 | CH_ath_277 | 3 | 4 | 0.0000014083 |
| Brassica napus | C01 | 5 | CH_bna_869 | 3 | 4 | 0.0000204188 |
| Camellia sinensis var. sinensis | Chr12 | 5 | CH_camsi_561 | 4 | 7 | 0.000000318071 |
| Cannabis sativa | NC_044378.1 | 5 | CH_cansat_177 | 4 | 7 | 0.0000000297349 |
| Cardamine hirsuta | Chr1 | 5 | CH_chi_341 | 3 | 3 | 0.00000204968 |
| Chenopodium quinoa | C_Quinoa_Scaffold_1783 | 5 | CH_cqu_169 | 5 | 6 | 0.0000000000988171 |
| Erigeron canadensis | Conyza_canadensis_scaffold:5 | 5 | CH_eca_360 | 4 | 15 | 0.00000178661 |
| Eucalyptus grandis | Chr05 | 5 | CH_egr_616 | 4 | 4 | 0.0000000123158 |
| Eutrema salsugineum | scaffold_5 | 5 | CH_esa_224 | 3 | 3 | 0.00000248778 |
| Gossypium hirsutum | A12 | 5 | CH_ghi_419 | 4 | 5 | 0.0000000289082 |
| Gossypium hirsutum | D12 | 5 | CH_ghi_420 | 4 | 5 | 0.0000000289082 |
| Gossypium hirsutum | A11 | 5 | CH_ghi_802 | 3 | 4 | 0.0000455844 |
| Glycine max | Gm16 | 5 | CH_gma_505 | 3 | 3 | 0.0000141437 |
| Glycine max | Gm02 | 5 | CH_gma_506 | 3 | 3 | 0.0000141437 |
| Gossypium raimondii | Chr11 | 5 | CH_gra_209 | 4 | 4 | 0.00000000811311 |
| Gossypium raimondii | Chr07 | 5 | CH_gra_210 | 4 | 4 | 0.00000000811311 |
| Lonicera japonica | GWHAAZE00000003 | 5 | CH_lonja_963 | 3 | 6 | 0.000190283 |
| Papaver somniferum | NC_039359.1 | 5 | CH_pso_1169 | 3 | 8 | 0.00052526 |
| Papaver somniferum | NC_039368.1 | 5 | CH_pso_124 | 8 | 33 | 0.000000000000001852 |
| Papaver somniferum | NW_020631041.1 | 5 | CH_pso_183 | 7 | 30 | 0.000000000000670003 |
| Papaver somniferum | NW_020619603.1 | 5 | CH_pso_717 | 3 | 3 | 0.00000939604 |
| Phaseolus vulgaris | Chr10 | 5 | CH_pvu_410 | 3 | 4 | 0.0000498536 |
| Rosa chinensis | RcHm_v2.0_Chr7 | 5 | CH_rch_381 | 5 | 10 | 0.000000000565763 |
| Rosa chinensis | RcHm_v2.0_Chr5 | 5 | CH_rch_841 | 3 | 3 | 0.00000871079 |
| Rhododendron simsii | chr06 | 5 | CH_rsi_235 | 5 | 7 | 0.0000000000423151 |
| Acer truncatum | chr10 | 6 | CH_acertr_141 | 4 | 4 | 0.000000000520337 |
| Amaranthus hybridus | AmaHy_arrow1_Scaffold_7 | 6 | CH_amhyb_173 | 3 | 3 | 0.00000867295 |
| Aquilegia oxysepala | CHR07 | 6 | CH_aox_262 | 3 | 3 | 0.0000109989 |
| Arabidopsis thaliana | Chr1 | 6 | CH_ath_277 | 3 | 4 | 0.0000014083 |
| Brassica napus | C01 | 6 | CH_bna_869 | 3 | 4 | 0.0000204188 |
| Camellia sinensis var. sinensis | Chr12 | 6 | CH_camsi_561 | 4 | 7 | 0.000000318071 |
| Cannabis sativa | NC_044378.1 | 6 | CH_cansat_177 | 4 | 7 | 0.0000000297349 |
| Cardamine hirsuta | Chr1 | 6 | CH_chi_341 | 3 | 3 | 0.00000204968 |
| Chenopodium quinoa | C_Quinoa_Scaffold_1783 | 6 | CH_cqu_169 | 5 | 6 | 0.0000000000988171 |
| Erigeron canadensis | Conyza_canadensis_scaffold:5 | 6 | CH_eca_360 | 4 | 15 | 0.00000178661 |
| Eucalyptus grandis | Chr05 | 6 | CH_egr_616 | 4 | 4 | 0.0000000123158 |
| Eutrema salsugineum | scaffold_5 | 6 | CH_esa_224 | 3 | 3 | 0.00000248778 |
| Gossypium hirsutum | A12 | 6 | CH_ghi_419 | 4 | 5 | 0.0000000289082 |
| Gossypium hirsutum | D12 | 6 | CH_ghi_420 | 4 | 5 | 0.0000000289082 |
| Gossypium hirsutum | A11 | 6 | CH_ghi_802 | 3 | 4 | 0.0000455844 |
| Glycine max | Gm16 | 6 | CH_gma_505 | 3 | 3 | 0.0000141437 |
| Glycine max | Gm02 | 6 | CH_gma_506 | 3 | 3 | 0.0000141437 |
| Gossypium raimondii | Chr11 | 6 | CH_gra_209 | 4 | 4 | 0.00000000811311 |
| Gossypium raimondii | Chr07 | 6 | CH_gra_210 | 4 | 4 | 0.00000000811311 |
| Lonicera japonica | GWHAAZE00000003 | 6 | CH_lonja_963 | 3 | 6 | 0.000190283 |
| Papaver somniferum | NC_039359.1 | 6 | CH_pso_1169 | 3 | 8 | 0.00052526 |
| Papaver somniferum | NC_039368.1 | 6 | CH_pso_124 | 8 | 33 | 0.000000000000001852 |
| Papaver somniferum | NW_020631041.1 | 6 | CH_pso_183 | 7 | 30 | 0.000000000000670003 |
| Papaver somniferum | NW_020619603.1 | 6 | CH_pso_717 | 3 | 3 | 0.00000939604 |
| Phaseolus vulgaris | Chr10 | 6 | CH_pvu_410 | 3 | 4 | 0.0000498536 |
| Rosa chinensis | RcHm_v2.0_Chr7 | 6 | CH_rch_381 | 5 | 10 | 0.000000000565763 |
| Rosa chinensis | RcHm_v2.0_Chr5 | 6 | CH_rch_841 | 3 | 3 | 0.00000871079 |
| Rhododendron simsii | chr06 | 6 | CH_rsi_235 | 5 | 7 | 0.0000000000423151 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |