Functional clusters
Information
- Type InterPro
- Description NRT1/PTR family
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Acer truncatum | chr13 | 5 | CH_acertr_345 | 3 | 3 | 0.00000062622 |
| Arabidopsis lyrata | scaffold_1 | 5 | CH_aly_325 | 3 | 3 | 0.00000237877 |
| Amaranthus hybridus | AmaHy_arrow1_Scaffold_5 | 5 | CH_amhyb_292 | 2 | 2 | 0.000252525 |
| Arabidopsis thaliana | Chr1 | 5 | CH_ath_136 | 4 | 6 | 0.00000000105899 |
| Arabidopsis thaliana | Chr1 | 5 | CH_ath_354 | 3 | 8 | 0.0000250798 |
| Beta vulgaris | Chr1_EL10_PGA_scaffold3 | 5 | CH_bvu_463 | 2 | 2 | 0.00049675 |
| Camellia sinensis var. sinensis | Chr9 | 5 | CH_camsi_1535 | 2 | 2 | 0.000962949 |
| Carica papaya | supercontig_177 | 5 | CH_cpa_164 | 3 | 3 | 0.00000027114 |
| Capsella rubella | scaffold_1 | 5 | CH_cru_334 | 3 | 3 | 0.00000364869 |
| Capsella rubella | scaffold_2 | 5 | CH_cru_404 | 3 | 5 | 0.0000364602 |
| Cucumis sativus L. | chr3 | 5 | CH_csa_115 | 4 | 4 | 0.000000001747 |
| Durio zibethinus | NW_019168004.1 | 5 | CH_dzi_116 | 4 | 4 | 0.000000000710961 |
| Erythranthe guttata | scaffold_3 | 5 | CH_egut_312 | 3 | 3 | 0.000000445382 |
| Fragaria vesca | Fvb5 | 5 | CH_fve_232 | 4 | 7 | 0.00000000450604 |
| Magnolia biondii | Chr17 | 5 | CH_mbi_428 | 3 | 3 | 0.000000198133 |
| Manihot esculenta | Chromosome18 | 5 | CH_mes_269 | 4 | 7 | 0.0000000326068 |
| Nelumbo nucifera | chr1 | 5 | CH_nnu_127 | 4 | 5 | 0.00000000305049 |
| Nelumbo nucifera | chr3 | 5 | CH_nnu_307 | 3 | 4 | 0.00000779402 |
| Olea europaea | chr20 | 5 | CH_oeu_73 | 4 | 6 | 0.000000000479023 |
| Oryza sativa ssp. japonica | chr10 | 5 | CH_osa_777 | 2 | 3 | 0.000950562 |
| Punica granatum | NC_045130.1 | 5 | CH_pgr_248 | 3 | 3 | 0.000000472967 |
| Pisum sativum | chr3LG5 | 5 | CH_psa_69 | 5 | 6 | 0.000000000000263873 |
| Populus trichocarpa | Chr13 | 5 | CH_ptr_164 | 5 | 7 | 0.0000000000204295 |
| Populus trichocarpa | Chr19 | 5 | CH_ptr_439 | 3 | 3 | 0.00000485607 |
| Quercus lobata | CM012294 | 5 | CH_qlo_782 | 4 | 7 | 0.0000000863922 |
| Rosa chinensis | RcHm_v2.0_Chr6 | 5 | CH_rch_764 | 3 | 3 | 0.00000231 |
| Rhododendron simsii | chr04 | 5 | CH_rsi_555 | 3 | 5 | 0.0000074928 |
| Solanum pennellii | Spenn-ch10 | 5 | CH_spe_896 | 2 | 2 | 0.00093406 |
| Tarenaya hassleriana | NW_010969032.1 | 5 | CH_tha_129 | 3 | 3 | 0.00000087818 |
| Tripterygium wilfordii | NC_052239.1 | 5 | CH_twi_325 | 3 | 6 | 0.0000339156 |
| Vanilla planifolia | CM028153.1 | 5 | CH_vpl_145 | 3 | 3 | 0.000000163789 |
| Acer truncatum | chr13 | 6 | CH_acertr_345 | 3 | 3 | 0.00000062622 |
| Arabidopsis lyrata | scaffold_1 | 6 | CH_aly_325 | 3 | 3 | 0.00000237877 |
| Amaranthus hybridus | AmaHy_arrow1_Scaffold_5 | 6 | CH_amhyb_292 | 2 | 2 | 0.000252525 |
| Arabidopsis thaliana | Chr1 | 6 | CH_ath_136 | 4 | 6 | 0.00000000105899 |
| Arabidopsis thaliana | Chr1 | 6 | CH_ath_354 | 3 | 8 | 0.0000250798 |
| Beta vulgaris | Chr1_EL10_PGA_scaffold3 | 6 | CH_bvu_463 | 2 | 2 | 0.00049675 |
| Camellia sinensis var. sinensis | Chr9 | 6 | CH_camsi_1535 | 2 | 2 | 0.000962949 |
| Cucumis melo | chr09 | 6 | CH_cme_98 | 4 | 4 | 0.00000000029395 |
| Carica papaya | supercontig_177 | 6 | CH_cpa_164 | 3 | 3 | 0.00000027114 |
| Capsella rubella | scaffold_1 | 6 | CH_cru_334 | 3 | 3 | 0.00000364869 |
| Capsella rubella | scaffold_2 | 6 | CH_cru_404 | 3 | 5 | 0.0000364602 |
| Cucumis sativus L. | chr3 | 6 | CH_csa_115 | 4 | 4 | 0.000000001747 |
| Durio zibethinus | NW_019168004.1 | 6 | CH_dzi_116 | 4 | 4 | 0.000000000710961 |
| Erythranthe guttata | scaffold_3 | 6 | CH_egut_312 | 3 | 3 | 0.000000445382 |
| Fragaria vesca | Fvb5 | 6 | CH_fve_232 | 4 | 7 | 0.00000000450604 |
| Magnolia biondii | Chr17 | 6 | CH_mbi_428 | 3 | 3 | 0.000000198133 |
| Manihot esculenta | Chromosome18 | 6 | CH_mes_269 | 4 | 7 | 0.0000000326068 |
| Nelumbo nucifera | chr1 | 6 | CH_nnu_127 | 4 | 5 | 0.00000000305049 |
| Nelumbo nucifera | chr3 | 6 | CH_nnu_307 | 3 | 4 | 0.00000779402 |
| Olea europaea | chr20 | 6 | CH_oeu_73 | 4 | 6 | 0.000000000479023 |
| Oryza sativa ssp. japonica | chr10 | 6 | CH_osa_777 | 2 | 3 | 0.000950562 |
| Punica granatum | NC_045130.1 | 6 | CH_pgr_248 | 3 | 3 | 0.000000472967 |
| Pisum sativum | chr3LG5 | 6 | CH_psa_69 | 5 | 6 | 0.000000000000263873 |
| Populus trichocarpa | Chr13 | 6 | CH_ptr_164 | 5 | 7 | 0.0000000000204295 |
| Populus trichocarpa | Chr19 | 6 | CH_ptr_439 | 3 | 3 | 0.00000485607 |
| Quercus lobata | CM012294 | 6 | CH_qlo_782 | 4 | 7 | 0.0000000863922 |
| Rosa chinensis | RcHm_v2.0_Chr6 | 6 | CH_rch_764 | 3 | 3 | 0.00000231 |
| Rhododendron simsii | chr04 | 6 | CH_rsi_555 | 3 | 5 | 0.0000074928 |
| Solanum pennellii | Spenn-ch10 | 6 | CH_spe_896 | 2 | 2 | 0.00093406 |
| Tarenaya hassleriana | NW_010969032.1 | 6 | CH_tha_129 | 3 | 3 | 0.00000087818 |
| Tripterygium wilfordii | NC_052239.1 | 6 | CH_twi_325 | 3 | 6 | 0.0000339156 |
| Vanilla planifolia | CM028153.1 | 6 | CH_vpl_145 | 3 | 3 | 0.000000163789 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |