Functional clusters
Information
- Type InterPro
- Description ABC transporter C family, six-transmembrane helical domain 2
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Anthoceros agrestis | Sc2ySwM_117 | 5 | CH_aag_152 | 3 | 4 | 0.0000140628 |
| Arabidopsis lyrata | scaffold_3 | 5 | CH_aly_300 | 3 | 3 | 0.00000143772 |
| Arachis hypogaea | arahy.Tifrunner.gnm1.Arahy.17 | 5 | CH_arhy_810 | 3 | 3 | 0.0000165922 |
| Arachis hypogaea | arahy.Tifrunner.gnm1.Arahy.07 | 5 | CH_arhy_906 | 3 | 4 | 0.0000663379 |
| Arabidopsis thaliana | Chr3 | 5 | CH_ath_276 | 3 | 4 | 0.0000014083 |
| Brassica carinata | ChrC01 | 5 | CH_bca_1193 | 3 | 6 | 0.0000315123 |
| Brassica napus | C03 | 5 | CH_bna_1099 | 3 | 7 | 0.000129027 |
| Beta vulgaris | Chr5_EL10_PGA_scaffold2 | 5 | CH_bvu_501 | 3 | 10 | 0.00068881 |
| Camellia sinensis var. sinensis | Chr8 | 5 | CH_camsi_243 | 6 | 16 | 0.0000000000402432 |
| Cannabis sativa | NC_044374.1 | 5 | CH_cansat_330 | 3 | 5 | 0.0000184878 |
| Chara braunii | BFEA01000150 | 5 | CH_cbr_299 | 2 | 2 | 0.000431562 |
| Citrus clementina | scaffold_1 | 5 | CH_ccl_229 | 4 | 4 | 0.00000000301427 |
| Carpinus fangiana | Cfa08 | 5 | CH_cfa_160 | 4 | 6 | 0.00000000237206 |
| Carpinus fangiana | Cfa06 | 5 | CH_cfa_161 | 4 | 4 | 0.00000000237206 |
| Cardamine hirsuta | Chr3 | 5 | CH_chi_331 | 3 | 3 | 0.00000118251 |
| Carya illinoinensis | Chr08 | 5 | CH_cil_455 | 3 | 3 | 0.00000391883 |
| Capsella rubella | scaffold_3 | 5 | CH_cru_336 | 3 | 3 | 0.00000364869 |
| Daucus carota | DCARv2_Chr2 | 5 | CH_dca_338 | 3 | 3 | 0.0000108059 |
| Durio zibethinus | NW_019167993.1 | 5 | CH_dzi_289 | 3 | 3 | 0.00000367354 |
| Erigeron canadensis | Conyza_canadensis_scaffold:9 | 5 | CH_eca_446 | 3 | 4 | 0.0000117034 |
| Eucalyptus grandis | Chr06 | 5 | CH_egr_452 | 5 | 6 | 0.0000000000426105 |
| Eucalyptus grandis | Chr05 | 5 | CH_egr_970 | 3 | 3 | 0.0000150297 |
| Eucalyptus grandis | Chr08 | 5 | CH_egr_971 | 3 | 3 | 0.0000150297 |
| Fragaria vesca | Fvb5 | 5 | CH_fve_244 | 4 | 5 | 0.00000000729678 |
| Gossypium hirsutum | D11 | 5 | CH_ghi_389 | 4 | 4 | 0.00000000850981 |
| Gossypium hirsutum | A10 | 5 | CH_ghi_813 | 3 | 4 | 0.000060677 |
| Gossypium raimondii | Chr08 | 5 | CH_gra_202 | 4 | 4 | 0.00000000491224 |
| Helianthus annuus | HanXRQChr13 | 5 | CH_han_442 | 4 | 6 | 0.000000093298 |
| Lotus japonicus | chr2 | 5 | CH_lja_176 | 4 | 6 | 0.000000098385 |
| Lactuca sativa | Lsat_1_v8_lg_6 | 5 | CH_lsa_552 | 3 | 4 | 0.0000180656 |
| Malus domestica | Chr11 | 5 | CH_mdo_295 | 4 | 4 | 0.00000000173844 |
| Malus domestica | Chr06 | 5 | CH_mdo_672 | 3 | 3 | 0.00000436589 |
| Marchantia polymorpha | scaffold_32 | 5 | CH_mpo_131 | 3 | 5 | 0.0000522811 |
| Medicago truncatula | chr6 | 5 | CH_mtr_174 | 7 | 12 | 0.00000000000000308122 |
| Medicago truncatula | chr2 | 5 | CH_mtr_864 | 3 | 3 | 0.000019675 |
| Prunus persica | Pp05 | 5 | CH_ppe_447 | 3 | 3 | 0.00000379798 |
| Prunus persica | Pp04 | 5 | CH_ppe_509 | 3 | 4 | 0.0000151863 |
| Papaver somniferum | NC_039359.1 | 5 | CH_pso_835 | 3 | 4 | 0.0000403198 |
| Populus trichocarpa | scaffold_67 | 5 | CH_ptr_486 | 3 | 3 | 0.0000183118 |
| Populus trichocarpa | Chr03 | 5 | CH_ptr_487 | 3 | 3 | 0.0000183118 |
| Quercus lobata | 8 | 5 | CH_qlo_305 | 7 | 14 | 0.0000000000000134116 |
| Rhododendron simsii | chr02 | 5 | CH_rsi_590 | 3 | 4 | 0.0000203806 |
| Salix brachista | GWHAAZH00000016 | 5 | CH_sbr_367 | 3 | 3 | 0.00000679021 |
| Sechium edule | LG07 | 5 | CH_sed_250 | 3 | 3 | 0.00000870365 |
| Sechium edule | LG10 | 5 | CH_sed_251 | 3 | 3 | 0.00000870365 |
| Sequoiadendron giganteum | chr3 | 5 | CH_sgi_284 | 8 | 21 | 6.48846e-17 |
| Schrenkiella parvula | ch3-1 | 5 | CH_spa_156 | 3 | 3 | 0.00000204576 |
| Vitis vinifera | chr2 | 5 | CH_vvi_122 | 6 | 10 | 0.000000000000895933 |
| Anthoceros agrestis | Sc2ySwM_117 | 6 | CH_aag_152 | 3 | 4 | 0.0000140628 |
| Arabidopsis lyrata | scaffold_3 | 6 | CH_aly_300 | 3 | 3 | 0.00000143772 |
| Arachis hypogaea | arahy.Tifrunner.gnm1.Arahy.17 | 6 | CH_arhy_810 | 3 | 3 | 0.0000165922 |
| Arachis hypogaea | arahy.Tifrunner.gnm1.Arahy.07 | 6 | CH_arhy_906 | 3 | 4 | 0.0000663379 |
| Arabidopsis thaliana | Chr3 | 6 | CH_ath_276 | 3 | 4 | 0.0000014083 |
| Brassica carinata | ChrC01 | 6 | CH_bca_1193 | 3 | 6 | 0.0000315123 |
| Brassica napus | C03 | 6 | CH_bna_1099 | 3 | 7 | 0.000129027 |
| Beta vulgaris | Chr5_EL10_PGA_scaffold2 | 6 | CH_bvu_501 | 3 | 10 | 0.00068881 |
| Camellia sinensis var. sinensis | Chr8 | 6 | CH_camsi_243 | 6 | 16 | 0.0000000000402432 |
| Cannabis sativa | NC_044374.1 | 6 | CH_cansat_330 | 3 | 5 | 0.0000184878 |
| Chara braunii | BFEA01000150 | 6 | CH_cbr_299 | 2 | 2 | 0.000431562 |
| Citrus clementina | scaffold_1 | 6 | CH_ccl_229 | 4 | 4 | 0.00000000301427 |
| Carpinus fangiana | Cfa08 | 6 | CH_cfa_160 | 4 | 6 | 0.00000000237206 |
| Carpinus fangiana | Cfa06 | 6 | CH_cfa_161 | 4 | 4 | 0.00000000237206 |
| Cardamine hirsuta | Chr3 | 6 | CH_chi_331 | 3 | 3 | 0.00000118251 |
| Carya illinoinensis | Chr08 | 6 | CH_cil_455 | 3 | 3 | 0.00000391883 |
| Capsella rubella | scaffold_3 | 6 | CH_cru_336 | 3 | 3 | 0.00000364869 |
| Daucus carota | DCARv2_Chr2 | 6 | CH_dca_338 | 3 | 3 | 0.0000108059 |
| Durio zibethinus | NW_019167993.1 | 6 | CH_dzi_289 | 3 | 3 | 0.00000367354 |
| Erigeron canadensis | Conyza_canadensis_scaffold:9 | 6 | CH_eca_446 | 3 | 4 | 0.0000117034 |
| Eucalyptus grandis | Chr06 | 6 | CH_egr_452 | 5 | 6 | 0.0000000000426105 |
| Eucalyptus grandis | Chr05 | 6 | CH_egr_970 | 3 | 3 | 0.0000150297 |
| Eucalyptus grandis | Chr08 | 6 | CH_egr_971 | 3 | 3 | 0.0000150297 |
| Fragaria x ananassa | Fvb5-1 | 6 | CH_fan_1032 | 3 | 8 | 0.000407498 |
| Fragaria x ananassa | Fvb5-4 | 6 | CH_fan_603 | 3 | 3 | 0.0000072877 |
| Fragaria vesca | Fvb5 | 6 | CH_fve_244 | 4 | 5 | 0.00000000729678 |
| Gossypium hirsutum | D11 | 6 | CH_ghi_389 | 4 | 4 | 0.00000000850981 |
| Gossypium hirsutum | A10 | 6 | CH_ghi_813 | 3 | 4 | 0.000060677 |
| Gossypium raimondii | Chr08 | 6 | CH_gra_202 | 4 | 4 | 0.00000000491224 |
| Helianthus annuus | HanXRQChr13 | 6 | CH_han_442 | 4 | 6 | 0.000000093298 |
| Lotus japonicus | chr2 | 6 | CH_lja_176 | 4 | 6 | 0.000000098385 |
| Lactuca sativa | Lsat_1_v8_lg_6 | 6 | CH_lsa_552 | 3 | 4 | 0.0000180656 |
| Malus domestica | Chr11 | 6 | CH_mdo_295 | 4 | 4 | 0.00000000173844 |
| Malus domestica | Chr06 | 6 | CH_mdo_672 | 3 | 3 | 0.00000436589 |
| Marchantia polymorpha | scaffold_32 | 6 | CH_mpo_131 | 3 | 5 | 0.0000522811 |
| Medicago truncatula | chr6 | 6 | CH_mtr_174 | 7 | 12 | 0.00000000000000308122 |
| Medicago truncatula | chr2 | 6 | CH_mtr_864 | 3 | 3 | 0.000019675 |
| Prunus persica | Pp05 | 6 | CH_ppe_447 | 3 | 3 | 0.00000379798 |
| Prunus persica | Pp04 | 6 | CH_ppe_509 | 3 | 4 | 0.0000151863 |
| Papaver somniferum | NC_039359.1 | 6 | CH_pso_835 | 3 | 4 | 0.0000403198 |
| Populus trichocarpa | scaffold_67 | 6 | CH_ptr_486 | 3 | 3 | 0.0000183118 |
| Populus trichocarpa | Chr03 | 6 | CH_ptr_487 | 3 | 3 | 0.0000183118 |
| Quercus lobata | 8 | 6 | CH_qlo_305 | 7 | 14 | 0.0000000000000134116 |
| Rhododendron simsii | chr02 | 6 | CH_rsi_590 | 3 | 4 | 0.0000203806 |
| Salix brachista | GWHAAZH00000016 | 6 | CH_sbr_367 | 3 | 3 | 0.00000679021 |
| Sechium edule | LG07 | 6 | CH_sed_250 | 3 | 3 | 0.00000870365 |
| Sechium edule | LG10 | 6 | CH_sed_251 | 3 | 3 | 0.00000870365 |
| Sequoiadendron giganteum | chr3 | 6 | CH_sgi_284 | 8 | 21 | 6.48846e-17 |
| Schrenkiella parvula | ch3-1 | 6 | CH_spa_156 | 3 | 3 | 0.00000204576 |
| Vitis vinifera | chr2 | 6 | CH_vvi_122 | 6 | 10 | 0.000000000000895933 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |