Functional clusters
Information
- Type InterPro
- Description AAI/SS protein, conserved domain
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Amaranthus hybridus | AmaHy_arrow1_Scaffold_6 | 5 | CH_amhyb_255 | 2 | 2 | 0.0000841751 |
| Amborella trichopoda | AmTr_v1.0_scaffold00005 | 5 | CH_atr_552 | 2 | 4 | 0.000476607 |
| Brassica carinata | ChrC09 | 5 | CH_bca_161 | 5 | 11 | 0.00000000000315843 |
| Brassica carinata | Contig1030 | 5 | CH_bca_934 | 3 | 5 | 0.00000383755 |
| Beta vulgaris | Chr4_EL10_PGA_scaffold1 | 5 | CH_bvu_369 | 2 | 2 | 0.0000827917 |
| Cannabis sativa | NC_044375.1 | 5 | CH_cansat_476 | 2 | 2 | 0.000196993 |
| Capsicum annuum | PGAv.1.6.scaffold981 | 5 | CH_can_278 | 3 | 3 | 0.0000000409487 |
| Ceratophyllum demersum | 3 | 5 | CH_cde_462 | 2 | 2 | 0.000473878 |
| Ceratophyllum demersum | 9 | 5 | CH_cde_463 | 2 | 2 | 0.000473878 |
| Citrullus lanatus | CG_Chr10 | 5 | CH_cla_270 | 2 | 3 | 0.000266123 |
| Chenopodium quinoa | C_Quinoa_Scaffold_1529 | 5 | CH_cqu_770 | 2 | 2 | 0.000142146 |
| Erigeron canadensis | Conyza_canadensis_scaffold:5 | 5 | CH_eca_830 | 2 | 2 | 0.000673083 |
| Eucalyptus grandis | Chr06 | 5 | CH_egr_1092 | 2 | 2 | 0.0000585274 |
| Gossypium raimondii | Chr09 | 5 | CH_gra_698 | 2 | 3 | 0.000964932 |
| Helianthus annuus | HanXRQChr11 | 5 | CH_han_672 | 3 | 11 | 0.00000738812 |
| Lactuca sativa | Lsat_1_v8_lg_7 | 5 | CH_lsa_71 | 6 | 6 | 3.73061e-18 |
| Magnolia biondii | Chr18 | 5 | CH_mbi_1004 | 2 | 4 | 0.000291382 |
| Medicago truncatula | chr2 | 5 | CH_mtr_406 | 3 | 3 | 0.00000000253218 |
| Nelumbo nucifera | chr1 | 5 | CH_nnu_168 | 3 | 6 | 0.0000000348021 |
| Nicotiana tabacum | Nitab4.5_0000397 | 5 | CH_nta_289 | 2 | 2 | 0.000329182 |
| Oryza sativa ssp. japonica | chr12 | 5 | CH_osa_182 | 4 | 4 | 0.00000000135233 |
| Petunia axillaris | Peaxi162Scf00450 | 5 | CH_pax_205 | 3 | 3 | 0.000000148503 |
| Punica granatum | NC_045133.1 | 5 | CH_pgr_100 | 4 | 5 | 0.00000000000633763 |
| Papaver somniferum | NC_039363.1 | 5 | CH_pso_1217 | 2 | 2 | 0.000630822 |
| Quercus lobata | 8 | 5 | CH_qlo_915 | 3 | 11 | 0.000000659603 |
| Solanum lycopersicum | SL4.0ch07 | 5 | CH_sly_831 | 2 | 2 | 0.000352164 |
| Solanum pennellii | Spenn-ch07 | 5 | CH_spe_241 | 3 | 3 | 0.0000000296764 |
| Solanum tuberosum | ST4.03ch07 | 5 | CH_stu_895 | 2 | 6 | 0.0007686 |
| Trifolium pratense | Tp57577_TGAC_v2_LG7 | 5 | CH_tpr_516 | 2 | 2 | 0.0000756974 |
| Tripterygium wilfordii | NC_052250.1 | 5 | CH_twi_388 | 2 | 3 | 0.000167247 |
| Amaranthus hybridus | AmaHy_arrow1_Scaffold_6 | 6 | CH_amhyb_255 | 2 | 2 | 0.0000841751 |
| Amborella trichopoda | AmTr_v1.0_scaffold00005 | 6 | CH_atr_552 | 2 | 4 | 0.000476607 |
| Brassica carinata | ChrC09 | 6 | CH_bca_161 | 5 | 11 | 0.00000000000315843 |
| Brassica carinata | Contig1030 | 6 | CH_bca_934 | 3 | 5 | 0.00000383755 |
| Beta vulgaris | Chr4_EL10_PGA_scaffold1 | 6 | CH_bvu_369 | 2 | 2 | 0.0000827917 |
| Cannabis sativa | NC_044375.1 | 6 | CH_cansat_476 | 2 | 2 | 0.000196993 |
| Capsicum annuum | PGAv.1.6.scaffold981 | 6 | CH_can_278 | 3 | 3 | 0.0000000409487 |
| Ceratophyllum demersum | 3 | 6 | CH_cde_462 | 2 | 2 | 0.000473878 |
| Ceratophyllum demersum | 9 | 6 | CH_cde_463 | 2 | 2 | 0.000473878 |
| Citrullus lanatus | CG_Chr10 | 6 | CH_cla_270 | 2 | 3 | 0.000266123 |
| Chenopodium quinoa | C_Quinoa_Scaffold_1529 | 6 | CH_cqu_770 | 2 | 2 | 0.000142146 |
| Erigeron canadensis | Conyza_canadensis_scaffold:5 | 6 | CH_eca_830 | 2 | 2 | 0.000673083 |
| Eucalyptus grandis | Chr06 | 6 | CH_egr_1092 | 2 | 2 | 0.0000585274 |
| Gossypium raimondii | Chr09 | 6 | CH_gra_698 | 2 | 3 | 0.000964932 |
| Helianthus annuus | HanXRQChr11 | 6 | CH_han_672 | 3 | 11 | 0.00000738812 |
| Lactuca sativa | Lsat_1_v8_lg_7 | 6 | CH_lsa_71 | 6 | 6 | 3.73061e-18 |
| Magnolia biondii | Chr18 | 6 | CH_mbi_1004 | 2 | 4 | 0.000291382 |
| Medicago truncatula | chr2 | 6 | CH_mtr_406 | 3 | 3 | 0.00000000253218 |
| Nelumbo nucifera | chr1 | 6 | CH_nnu_168 | 3 | 6 | 0.0000000348021 |
| Nicotiana tabacum | Nitab4.5_0000397 | 6 | CH_nta_289 | 2 | 2 | 0.000329182 |
| Oryza sativa ssp. japonica | chr12 | 6 | CH_osa_182 | 4 | 4 | 0.00000000135233 |
| Petunia axillaris | Peaxi162Scf00450 | 6 | CH_pax_205 | 3 | 3 | 0.000000148503 |
| Punica granatum | NC_045133.1 | 6 | CH_pgr_100 | 4 | 5 | 0.00000000000633763 |
| Papaver somniferum | NC_039363.1 | 6 | CH_pso_1217 | 2 | 2 | 0.000630822 |
| Quercus lobata | 8 | 6 | CH_qlo_915 | 3 | 11 | 0.000000659603 |
| Solanum lycopersicum | SL4.0ch07 | 6 | CH_sly_831 | 2 | 2 | 0.000352164 |
| Solanum pennellii | Spenn-ch07 | 6 | CH_spe_241 | 3 | 3 | 0.0000000296764 |
| Solanum tuberosum | ST4.03ch07 | 6 | CH_stu_895 | 2 | 6 | 0.0007686 |
| Trifolium pratense | Tp57577_TGAC_v2_LG7 | 6 | CH_tpr_516 | 2 | 2 | 0.0000756974 |
| Tripterygium wilfordii | NC_052250.1 | 6 | CH_twi_388 | 2 | 3 | 0.000167247 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |