Functional clusters
Information
- Type InterPro
- Description WD repeat-containing protein 86-like
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Amaranthus hybridus | AmaHy_arrow1_Scaffold_5 | 5 | CH_amhyb_438 | 2 | 3 | 0.000757523 |
| Arachis hypogaea | arahy.Tifrunner.gnm1.Arahy.12 | 5 | CH_arhy_387 | 6 | 47 | 0.00000000272577 |
| Beta vulgaris | Chr8_EL10_PGA_scaffold4 | 5 | CH_bvu_57 | 5 | 6 | 0.000000000000118411 |
| Cannabis sativa | NC_044379.1 | 5 | CH_cansat_37 | 6 | 9 | 6.46085e-17 |
| Eucalyptus grandis | Chr05 | 5 | CH_egr_253 | 6 | 9 | 5.99553e-16 |
| Glycine max | Gm15 | 5 | CH_gma_4 | 18 | 18 | 4.64189e-60 |
| Lupinus albus | Lalb_Chr01 | 5 | CH_lal_444 | 3 | 13 | 0.0000660911 |
| Lonicera japonica | GWHAAZE00000007 | 5 | CH_lonja_1239 | 2 | 2 | 0.000898311 |
| Medicago truncatula | chr3 | 5 | CH_mtr_1297 | 2 | 2 | 0.000410863 |
| Punica granatum | NC_045127.1 | 5 | CH_pgr_592 | 2 | 3 | 0.000675279 |
| Pisum sativum | chr4LG4 | 5 | CH_psa_229 | 3 | 3 | 0.000000081633 |
| Phaseolus vulgaris | Chr11 | 5 | CH_pvu_396 | 3 | 14 | 0.0000294457 |
| Quercus lobata | 4 | 5 | CH_qlo_273 | 7 | 28 | 0.00000000000000139509 |
| Rosa chinensis | RcHm_v2.0_Chr3 | 5 | CH_rch_1478 | 2 | 2 | 0.00083717 |
| Rhododendron simsii | chr07 | 5 | CH_rsi_903 | 2 | 2 | 0.000387184 |
| Sapria himalayana | scaffold9_16683904 | 5 | CH_shi_354 | 2 | 2 | 0.0000571804 |
| Theobroma cacao | Chromosome_1 | 5 | CH_tca_414 | 3 | 5 | 0.00000450427 |
| Vitis vinifera | chr16 | 5 | CH_vvi_542 | 3 | 26 | 0.0000901203 |
| Amaranthus hybridus | AmaHy_arrow1_Scaffold_5 | 6 | CH_amhyb_438 | 2 | 3 | 0.000757523 |
| Arachis hypogaea | arahy.Tifrunner.gnm1.Arahy.12 | 6 | CH_arhy_387 | 6 | 47 | 0.00000000272577 |
| Beta vulgaris | Chr8_EL10_PGA_scaffold4 | 6 | CH_bvu_57 | 5 | 6 | 0.000000000000118411 |
| Cannabis sativa | NC_044379.1 | 6 | CH_cansat_37 | 6 | 9 | 6.46085e-17 |
| Eucalyptus grandis | Chr05 | 6 | CH_egr_253 | 6 | 9 | 5.99553e-16 |
| Glycine max | Gm15 | 6 | CH_gma_4 | 18 | 18 | 4.64189e-60 |
| Lupinus albus | Lalb_Chr01 | 6 | CH_lal_444 | 3 | 13 | 0.0000660911 |
| Lonicera japonica | GWHAAZE00000007 | 6 | CH_lonja_1239 | 2 | 2 | 0.000898311 |
| Medicago truncatula | chr3 | 6 | CH_mtr_1297 | 2 | 2 | 0.000410863 |
| Punica granatum | NC_045127.1 | 6 | CH_pgr_592 | 2 | 3 | 0.000675279 |
| Pisum sativum | chr4LG4 | 6 | CH_psa_229 | 3 | 3 | 0.000000081633 |
| Phaseolus vulgaris | Chr11 | 6 | CH_pvu_396 | 3 | 14 | 0.0000294457 |
| Quercus lobata | 4 | 6 | CH_qlo_273 | 7 | 28 | 0.00000000000000139509 |
| Rosa chinensis | RcHm_v2.0_Chr3 | 6 | CH_rch_1478 | 2 | 2 | 0.00083717 |
| Rhododendron simsii | chr07 | 6 | CH_rsi_903 | 2 | 2 | 0.000387184 |
| Sapria himalayana | scaffold9_16683904 | 6 | CH_shi_354 | 2 | 2 | 0.0000571804 |
| Theobroma cacao | Chromosome_1 | 6 | CH_tca_414 | 3 | 5 | 0.00000450427 |
| Vitis vinifera | chr16 | 6 | CH_vvi_542 | 3 | 26 | 0.0000901203 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |