Functional clusters
Information
- Type InterPro
- Description Egg cell-secreted protein 1.2/1.3/1.4
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Arabidopsis lyrata | scaffold_8 | 5 | CH_aly_455 | 3 | 5 | 0.0000744324 |
| Aquilegia oxysepala | CHR06 | 5 | CH_aox_205 | 3 | 5 | 0.00000192913 |
| Arabidopsis thaliana | Chr5 | 5 | CH_ath_20 | 13 | 71 | 1.004e-22 |
| Arabidopsis thaliana | Chr5 | 5 | CH_ath_3 | 20 | 77 | 5.94468e-41 |
| Amborella trichopoda | AmTr_v1.0_scaffold00017 | 5 | CH_atr_135 | 4 | 10 | 0.00000000157872 |
| Brassica carinata | ChrB07 | 5 | CH_bca_1210 | 3 | 3 | 0.0000359127 |
| Brassica carinata | ChrC04 | 5 | CH_bca_1711 | 3 | 5 | 0.000358739 |
| Brassica carinata | ChrC03 | 5 | CH_bca_22 | 9 | 10 | 3.50145e-23 |
| Brassica carinata | ChrC02 | 5 | CH_bca_297 | 5 | 8 | 0.000000000983942 |
| Brassica carinata | ChrC03 | 5 | CH_bca_452 | 4 | 4 | 0.0000000253341 |
| Brassica carinata | ChrB01 | 5 | CH_bca_59 | 7 | 8 | 6.48253e-17 |
| Brassica carinata | ChrB01 | 5 | CH_bca_908 | 4 | 9 | 0.00000318307 |
| Brassica carinata | ChrC07 | 5 | CH_bca_96 | 6 | 6 | 0.0000000000000120404 |
| Brassica napus | A08 | 5 | CH_bna_112 | 6 | 6 | 0.0000000000000521888 |
| Brassica napus | C03 | 5 | CH_bna_130 | 6 | 7 | 0.000000000000365051 |
| Brassica napus | C08 | 5 | CH_bna_237 | 5 | 6 | 0.000000000362515 |
| Brassica napus | C02 | 5 | CH_bna_3 | 20 | 23 | 3.56864e-54 |
| Brassica napus | A02 | 5 | CH_bna_34 | 8 | 8 | 3.76378e-20 |
| Brassica napus | A08 | 5 | CH_bna_35 | 8 | 8 | 3.76378e-20 |
| Brassica napus | A02 | 5 | CH_bna_425 | 4 | 4 | 0.0000000693051 |
| Brassica napus | A03 | 5 | CH_bna_509 | 4 | 5 | 0.00000034628 |
| Brassica napus | C09 | 5 | CH_bna_665 | 4 | 7 | 0.00000242053 |
| Brassica napus | C04 | 5 | CH_bna_837 | 4 | 10 | 0.0000144924 |
| Brassica oleracea | C4 | 5 | CH_bol_146 | 5 | 11 | 0.00000000171952 |
| Brassica oleracea | C2 | 5 | CH_bol_4 | 12 | 13 | 2.56404e-34 |
| Brassica oleracea | C3 | 5 | CH_bol_65 | 6 | 8 | 0.000000000000163737 |
| Brassica rapa | A02 | 5 | CH_bra_116 | 4 | 4 | 0.00000000563839 |
| Brassica rapa | A02 | 5 | CH_bra_3 | 9 | 9 | 1.6392e-25 |
| Brassica rapa | A03 | 5 | CH_bra_334 | 3 | 4 | 0.0000403912 |
| Capsicum annuum | PGAv.1.6.scaffold184 | 5 | CH_can_504 | 3 | 14 | 0.000037221 |
| Cardamine hirsuta | Chr8 | 5 | CH_chi_547 | 3 | 4 | 0.0000938483 |
| Capsella rubella | scaffold_4 | 5 | CH_cru_421 | 3 | 4 | 0.0000493701 |
| Davidia involucrata | GWHABJS00000004 | 5 | CH_din_40 | 6 | 6 | 4.92926e-20 |
| Durio zibethinus | NW_019167860.1 | 5 | CH_dzi_587 | 2 | 2 | 0.000695233 |
| Eutrema salsugineum | scaffold_2 | 5 | CH_esa_238 | 3 | 3 | 0.00000316627 |
| Gossypium raimondii | Chr13 | 5 | CH_gra_300 | 3 | 3 | 0.00000071136 |
| Lonicera japonica | GWHAAZE00000007 | 5 | CH_lonja_802 | 2 | 2 | 0.0000598874 |
| Lactuca sativa | Lsat_1_v8_lg_5 | 5 | CH_lsa_719 | 2 | 2 | 0.000154202 |
| Malus domestica | Chr09 | 5 | CH_mdo_754 | 3 | 10 | 0.0000144863 |
| Manihot esculenta | Chromosome09 | 5 | CH_mes_291 | 3 | 3 | 0.000000111865 |
| Manihot esculenta | Chromosome12 | 5 | CH_mes_732 | 2 | 2 | 0.000915947 |
| Prunus persica | Pp05 | 5 | CH_ppe_863 | 2 | 2 | 0.000745962 |
| Prunus persica | Pp02 | 5 | CH_ppe_864 | 2 | 2 | 0.000745962 |
| Papaver somniferum | NC_039361.1 | 5 | CH_pso_1155 | 2 | 2 | 0.000473117 |
| Quercus lobata | 6 | 5 | CH_qlo_810 | 3 | 3 | 0.000000139945 |
| Rosa chinensis | RcHm_v2.0_Chr2 | 5 | CH_rch_939 | 3 | 11 | 0.000033012 |
| Rhododendron simsii | chr01 | 5 | CH_rsi_414 | 3 | 3 | 0.00000012493 |
| Salix brachista | GWHAAZH00000016 | 5 | CH_sbr_448 | 4 | 46 | 0.0000600486 |
| Salix brachista | GWHAAZH00000016 | 5 | CH_sbr_59 | 6 | 6 | 2.06621e-17 |
| Simmondsia chinensis | GWHAASQ00000018 | 5 | CH_sci_477 | 2 | 2 | 0.000510856 |
| Solanum lycopersicum | SL4.0ch05 | 5 | CH_sly_245 | 4 | 14 | 0.00000000910198 |
| Solanum pennellii | Spenn-ch05 | 5 | CH_spe_499 | 3 | 15 | 0.0000269821 |
| Theobroma cacao | Chromosome_9 | 5 | CH_tca_348 | 3 | 3 | 0.000000450584 |
| Tarenaya hassleriana | NW_010965304.1 | 5 | CH_tha_73 | 5 | 17 | 0.00000000330484 |
| Tripterygium wilfordii | NC_052235.1 | 5 | CH_twi_256 | 3 | 5 | 0.00000391516 |
| Vaccinium macrocarpon | chr11_Vaccinium_macrocarpon_Stevens_v1 | 5 | CH_vma_506 | 2 | 2 | 0.0000929238 |
| Arabidopsis lyrata | scaffold_8 | 6 | CH_aly_455 | 3 | 5 | 0.0000744324 |
| Aquilegia oxysepala | CHR06 | 6 | CH_aox_205 | 3 | 5 | 0.00000192913 |
| Arabidopsis thaliana | Chr5 | 6 | CH_ath_20 | 13 | 71 | 1.004e-22 |
| Arabidopsis thaliana | Chr5 | 6 | CH_ath_3 | 20 | 77 | 5.94468e-41 |
| Amborella trichopoda | AmTr_v1.0_scaffold00017 | 6 | CH_atr_135 | 4 | 10 | 0.00000000157872 |
| Brassica carinata | ChrB07 | 6 | CH_bca_1210 | 3 | 3 | 0.0000359127 |
| Brassica carinata | ChrC04 | 6 | CH_bca_1711 | 3 | 5 | 0.000358739 |
| Brassica carinata | ChrC03 | 6 | CH_bca_22 | 9 | 10 | 3.50145e-23 |
| Brassica carinata | ChrC02 | 6 | CH_bca_297 | 5 | 8 | 0.000000000983942 |
| Brassica carinata | ChrC03 | 6 | CH_bca_452 | 4 | 4 | 0.0000000253341 |
| Brassica carinata | ChrB01 | 6 | CH_bca_59 | 7 | 8 | 6.48253e-17 |
| Brassica carinata | ChrB01 | 6 | CH_bca_908 | 4 | 9 | 0.00000318307 |
| Brassica carinata | ChrC07 | 6 | CH_bca_96 | 6 | 6 | 0.0000000000000120404 |
| Brassica napus | A08 | 6 | CH_bna_112 | 6 | 6 | 0.0000000000000521888 |
| Brassica napus | C03 | 6 | CH_bna_130 | 6 | 7 | 0.000000000000365051 |
| Brassica napus | C08 | 6 | CH_bna_237 | 5 | 6 | 0.000000000362515 |
| Brassica napus | C02 | 6 | CH_bna_3 | 20 | 23 | 3.56864e-54 |
| Brassica napus | A02 | 6 | CH_bna_34 | 8 | 8 | 3.76378e-20 |
| Brassica napus | A08 | 6 | CH_bna_35 | 8 | 8 | 3.76378e-20 |
| Brassica napus | A02 | 6 | CH_bna_425 | 4 | 4 | 0.0000000693051 |
| Brassica napus | A03 | 6 | CH_bna_509 | 4 | 5 | 0.00000034628 |
| Brassica napus | C09 | 6 | CH_bna_665 | 4 | 7 | 0.00000242053 |
| Brassica napus | C04 | 6 | CH_bna_837 | 4 | 10 | 0.0000144924 |
| Brassica oleracea | C4 | 6 | CH_bol_146 | 5 | 11 | 0.00000000171952 |
| Brassica oleracea | C2 | 6 | CH_bol_4 | 12 | 13 | 2.56404e-34 |
| Brassica oleracea | C3 | 6 | CH_bol_65 | 6 | 8 | 0.000000000000163737 |
| Brassica rapa | A02 | 6 | CH_bra_116 | 4 | 4 | 0.00000000563839 |
| Brassica rapa | A02 | 6 | CH_bra_3 | 9 | 9 | 1.6392e-25 |
| Brassica rapa | A03 | 6 | CH_bra_334 | 3 | 4 | 0.0000403912 |
| Capsicum annuum | PGAv.1.6.scaffold184 | 6 | CH_can_504 | 3 | 14 | 0.000037221 |
| Cardamine hirsuta | Chr8 | 6 | CH_chi_547 | 3 | 4 | 0.0000938483 |
| Capsella rubella | scaffold_4 | 6 | CH_cru_421 | 3 | 4 | 0.0000493701 |
| Davidia involucrata | GWHABJS00000004 | 6 | CH_din_40 | 6 | 6 | 4.92926e-20 |
| Durio zibethinus | NW_019167860.1 | 6 | CH_dzi_587 | 2 | 2 | 0.000695233 |
| Eutrema salsugineum | scaffold_2 | 6 | CH_esa_238 | 3 | 3 | 0.00000316627 |
| Gossypium raimondii | Chr13 | 6 | CH_gra_300 | 3 | 3 | 0.00000071136 |
| Lonicera japonica | GWHAAZE00000007 | 6 | CH_lonja_802 | 2 | 2 | 0.0000598874 |
| Lactuca sativa | Lsat_1_v8_lg_5 | 6 | CH_lsa_719 | 2 | 2 | 0.000154202 |
| Malus domestica | Chr09 | 6 | CH_mdo_754 | 3 | 10 | 0.0000144863 |
| Manihot esculenta | Chromosome09 | 6 | CH_mes_291 | 3 | 3 | 0.000000111865 |
| Manihot esculenta | Chromosome12 | 6 | CH_mes_732 | 2 | 2 | 0.000915947 |
| Prunus persica | Pp05 | 6 | CH_ppe_863 | 2 | 2 | 0.000745962 |
| Prunus persica | Pp02 | 6 | CH_ppe_864 | 2 | 2 | 0.000745962 |
| Papaver somniferum | NC_039361.1 | 6 | CH_pso_1155 | 2 | 2 | 0.000473117 |
| Quercus lobata | 6 | 6 | CH_qlo_810 | 3 | 3 | 0.000000139945 |
| Rosa chinensis | RcHm_v2.0_Chr2 | 6 | CH_rch_939 | 3 | 11 | 0.000033012 |
| Rhododendron simsii | chr01 | 6 | CH_rsi_414 | 3 | 3 | 0.00000012493 |
| Salix brachista | GWHAAZH00000016 | 6 | CH_sbr_448 | 4 | 46 | 0.0000600486 |
| Salix brachista | GWHAAZH00000016 | 6 | CH_sbr_59 | 6 | 6 | 2.06621e-17 |
| Simmondsia chinensis | GWHAASQ00000018 | 6 | CH_sci_477 | 2 | 2 | 0.000510856 |
| Solanum lycopersicum | SL4.0ch05 | 6 | CH_sly_245 | 4 | 14 | 0.00000000910198 |
| Solanum pennellii | Spenn-ch05 | 6 | CH_spe_499 | 3 | 15 | 0.0000269821 |
| Theobroma cacao | Chromosome_9 | 6 | CH_tca_348 | 3 | 3 | 0.000000450584 |
| Tarenaya hassleriana | NW_010965304.1 | 6 | CH_tha_73 | 5 | 17 | 0.00000000330484 |
| Tripterygium wilfordii | NC_052235.1 | 6 | CH_twi_256 | 3 | 5 | 0.00000391516 |
| Vaccinium macrocarpon | chr11_Vaccinium_macrocarpon_Stevens_v1 | 6 | CH_vma_506 | 2 | 2 | 0.0000929238 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |