Functional clusters
Information
- Type InterPro
- Description Arabinogalactan protein 23/40
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Coffea canephora | chr2 | 5 | CH_ccan_643 | 2 | 16 | 0.000511054 |
| Gossypium hirsutum | D11 | 5 | CH_ghi_28 | 11 | 11 | 5.55196e-35 |
| Gossypium hirsutum | A01 | 5 | CH_ghi_632 | 3 | 3 | 0.00000278063 |
| Gossypium hirsutum | D01 | 5 | CH_ghi_633 | 3 | 3 | 0.00000278063 |
| Gossypium hirsutum | A11 | 5 | CH_ghi_70 | 8 | 8 | 4.76372e-24 |
| Gossypium raimondii | Chr07 | 5 | CH_gra_16 | 11 | 11 | 2.78608e-36 |
| Gossypium raimondii | Chr02 | 5 | CH_gra_312 | 3 | 3 | 0.0000015693 |
| Magnolia biondii | Chr04 | 5 | CH_mbi_938 | 2 | 2 | 0.000145698 |
| Nelumbo nucifera | chr7 | 5 | CH_nnu_540 | 2 | 3 | 0.000433498 |
| Phaseolus vulgaris | Chr11 | 5 | CH_pvu_633 | 2 | 2 | 0.000440836 |
| Rosa chinensis | RcHm_v2.0_Chr5 | 5 | CH_rch_513 | 3 | 4 | 0.0000000381412 |
| Sechium edule | LG03 | 5 | CH_sed_116 | 4 | 5 | 0.00000000743281 |
| Sechium edule | LG12 | 5 | CH_sed_240 | 3 | 3 | 0.00000347383 |
| Sechium edule | LG09 | 5 | CH_sed_51 | 5 | 5 | 0.000000000000583565 |
| Coffea canephora | chr2 | 6 | CH_ccan_643 | 2 | 16 | 0.000511054 |
| Gossypium hirsutum | D11 | 6 | CH_ghi_28 | 11 | 11 | 5.55196e-35 |
| Gossypium hirsutum | A01 | 6 | CH_ghi_632 | 3 | 3 | 0.00000278063 |
| Gossypium hirsutum | D01 | 6 | CH_ghi_633 | 3 | 3 | 0.00000278063 |
| Gossypium hirsutum | A11 | 6 | CH_ghi_70 | 8 | 8 | 4.76372e-24 |
| Gossypium raimondii | Chr07 | 6 | CH_gra_16 | 11 | 11 | 2.78608e-36 |
| Gossypium raimondii | Chr02 | 6 | CH_gra_312 | 3 | 3 | 0.0000015693 |
| Magnolia biondii | Chr04 | 6 | CH_mbi_938 | 2 | 2 | 0.000145698 |
| Nelumbo nucifera | chr7 | 6 | CH_nnu_540 | 2 | 3 | 0.000433498 |
| Phaseolus vulgaris | Chr11 | 6 | CH_pvu_633 | 2 | 2 | 0.000440836 |
| Rosa chinensis | RcHm_v2.0_Chr5 | 6 | CH_rch_513 | 3 | 4 | 0.0000000381412 |
| Sechium edule | LG03 | 6 | CH_sed_116 | 4 | 5 | 0.00000000743281 |
| Sechium edule | LG12 | 6 | CH_sed_240 | 3 | 3 | 0.00000347383 |
| Sechium edule | LG09 | 6 | CH_sed_51 | 5 | 5 | 0.000000000000583565 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |