Functional clusters

Information

  • Type InterPro
  • Description LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-like 1.1/1.2/1.3/1.4

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Acer truncatum chr11 5 CH_acertr_7 10 16 1.61209e-28
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.13 5 CH_arhy_381 4 4 0.00000000220624
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.05 5 CH_arhy_449 4 6 0.000000033072
Brassica carinata ChrC05 5 CH_bca_1187 3 5 0.0000307958
Brassica carinata ChrB03 5 CH_bca_361 4 5 0.00000000460928
Brassica carinata ChrB01 5 CH_bca_898 3 3 0.00000308103
Brassica napus A07 5 CH_bna_236 4 4 0.000000000336714
Brassica rapa A07 5 CH_bra_259 3 4 0.00000402462
Brassica rapa A09 5 CH_bra_260 3 3 0.00000402462
Camellia sinensis var. sinensis Chr6 5 CH_camsi_53 10 27 3.43199e-21
Camellia sinensis var. sinensis Chr10 5 CH_camsi_94 7 10 2.95324e-16
Capsicum annuum PGAv.1.6.scaffold610 5 CH_can_28 9 9 1.54068e-26
Cicer arietinum L. Ca_LG4_v3 5 CH_car_29 4 4 0.0000000000990177
Cardamine hirsuta Chr7 5 CH_chi_275 4 11 0.000000161558
Chenopodium quinoa C_Quinoa_Scaffold_1040 5 CH_cqu_503 3 4 0.00000490227
Davidia involucrata GWHABJS00000008 5 CH_din_134 5 10 0.0000000000354723
Erigeron canadensis Conyza_canadensis_scaffold:8 5 CH_eca_829 2 2 0.000673083
Eucalyptus grandis Chr02 5 CH_egr_152 10 30 5.56698e-21
Eucalyptus grandis Chr07 5 CH_egr_389 7 29 0.00000000000235033
Glycine max Gm09 5 CH_gma_165 5 10 0.00000000010316
Glycine max Gm20 5 CH_gma_74 6 8 0.00000000000000370152
Helianthus annuus HanXRQChr15 5 CH_han_133 6 9 0.0000000000000219034
Helianthus annuus HanXRQChr17 5 CH_han_640 3 3 0.00000453366
Helianthus annuus HanXRQChr16 5 CH_han_641 3 3 0.00000453366
Hydrangea macrophylla Hma1.2p1_0075F.1 5 CH_hma_595 2 2 0.000333259
Lonicera japonica GWHAAZE00000003 5 CH_lonja_680 3 7 0.000031043
Lactuca sativa Lsat_1_v8_lg_3 5 CH_lsa_91 6 8 0.0000000000000018097
Manihot esculenta Chromosome14 5 CH_mes_410 3 6 0.00000626169
Medicago truncatula chr1 5 CH_mtr_262 5 7 0.00000000000384407
Nicotiana tabacum Nitab4.5_0000694 5 CH_nta_127 3 4 0.000002528
Olea europaea scaffold256 5 CH_oeu_696 2 2 0.000800683
Petunia axillaris Peaxi162Scf00179 5 CH_pax_108 4 5 0.000000000365652
Pisum sativum chr6LG2 5 CH_psa_121 4 4 0.000000000426274
Pisum sativum chr1LG6 5 CH_psa_80 6 23 0.00000000000262581
Papaver somniferum NW_020624598.1 5 CH_pso_989 2 2 0.000135176
Populus trichocarpa Chr04 5 CH_ptr_256 4 6 0.0000000086945
Populus trichocarpa Chr10 5 CH_ptr_282 4 7 0.0000000202819
Phaseolus vulgaris Chr07 5 CH_pvu_89 5 5 0.000000000000100996
Quercus lobata 1 5 CH_qlo_1184 3 6 0.0000363574
Quercus lobata 1 5 CH_qlo_556 4 4 0.000000000563593
Rosa chinensis RcHm_v2.0_Chr4 5 CH_rch_568 4 17 0.0000000948581
Salvia bowleyana GWHASIU00000004 5 CH_sbo_610 3 7 0.000192194
Sapria himalayana scaffold33_6547121 5 CH_shi_4 9 26 1.11245e-22
Solanum lycopersicum SL4.0ch05 5 CH_sly_39 8 8 3.30975e-23
Solanum pennellii Spenn-ch05 5 CH_spe_24 7 7 1.04676e-21
Solanum tuberosum ST4.03ch05 5 CH_stu_15 13 30 1.61826e-33
Solanum tuberosum ST4.03ch03 5 CH_stu_460 3 3 0.0000038171
Theobroma cacao Chromosome_2 5 CH_tca_401 3 7 0.00000281512
Trifolium pratense Tp57577_TGAC_v2_LG4 5 CH_tpr_526 3 16 0.0000961153
Vaccinium macrocarpon chr8_Vaccinium_macrocarpon_Stevens_v1 5 CH_vma_59 6 11 0.0000000000000151159
Vigna mungo CM024071.1 5 CH_vmu_44 5 5 0.000000000000261769
Vanilla planifolia CM028160.1 5 CH_vpl_457 4 57 0.0000992617
Acer truncatum chr11 6 CH_acertr_7 10 16 1.61209e-28
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.13 6 CH_arhy_381 4 4 0.00000000220624
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.05 6 CH_arhy_449 4 6 0.000000033072
Brassica carinata ChrC05 6 CH_bca_1187 3 5 0.0000307958
Brassica carinata ChrB03 6 CH_bca_361 4 5 0.00000000460928
Brassica carinata ChrB01 6 CH_bca_898 3 3 0.00000308103
Brassica napus A07 6 CH_bna_236 4 4 0.000000000336714
Brassica rapa A07 6 CH_bra_259 3 4 0.00000402462
Brassica rapa A09 6 CH_bra_260 3 3 0.00000402462
Camellia sinensis var. sinensis Chr6 6 CH_camsi_53 10 27 3.43199e-21
Camellia sinensis var. sinensis Chr10 6 CH_camsi_94 7 10 2.95324e-16
Capsicum annuum PGAv.1.6.scaffold610 6 CH_can_28 9 9 1.54068e-26
Cicer arietinum L. Ca_LG4_v3 6 CH_car_29 4 4 0.0000000000990177
Cardamine hirsuta Chr7 6 CH_chi_275 4 11 0.000000161558
Chenopodium quinoa C_Quinoa_Scaffold_1040 6 CH_cqu_503 3 4 0.00000490227
Davidia involucrata GWHABJS00000008 6 CH_din_134 5 10 0.0000000000354723
Erigeron canadensis Conyza_canadensis_scaffold:8 6 CH_eca_829 2 2 0.000673083
Eucalyptus grandis Chr02 6 CH_egr_152 10 30 5.56698e-21
Eucalyptus grandis Chr07 6 CH_egr_389 7 29 0.00000000000235033
Fragaria x ananassa Fvb4-4 6 CH_fan_473 3 4 0.00000167614
Glycine max Gm09 6 CH_gma_165 5 10 0.00000000010316
Glycine max Gm20 6 CH_gma_74 6 8 0.00000000000000370152
Helianthus annuus HanXRQChr15 6 CH_han_133 6 9 0.0000000000000219034
Helianthus annuus HanXRQChr17 6 CH_han_640 3 3 0.00000453366
Helianthus annuus HanXRQChr16 6 CH_han_641 3 3 0.00000453366
Hydrangea macrophylla Hma1.2p1_0075F.1 6 CH_hma_595 2 2 0.000333259
Lonicera japonica GWHAAZE00000003 6 CH_lonja_680 3 7 0.000031043
Lactuca sativa Lsat_1_v8_lg_3 6 CH_lsa_91 6 8 0.0000000000000018097
Manihot esculenta Chromosome14 6 CH_mes_410 3 6 0.00000626169
Medicago truncatula chr1 6 CH_mtr_262 5 7 0.00000000000384407
Nicotiana tabacum Nitab4.5_0000694 6 CH_nta_127 3 4 0.000002528
Olea europaea scaffold256 6 CH_oeu_696 2 2 0.000800683
Petunia axillaris Peaxi162Scf00179 6 CH_pax_108 4 5 0.000000000365652
Pisum sativum chr6LG2 6 CH_psa_121 4 4 0.000000000426274
Pisum sativum chr1LG6 6 CH_psa_80 6 23 0.00000000000262581
Papaver somniferum NW_020624598.1 6 CH_pso_989 2 2 0.000135176
Populus trichocarpa Chr04 6 CH_ptr_256 4 6 0.0000000086945
Populus trichocarpa Chr10 6 CH_ptr_282 4 7 0.0000000202819
Phaseolus vulgaris Chr07 6 CH_pvu_89 5 5 0.000000000000100996
Quercus lobata 1 6 CH_qlo_1184 3 6 0.0000363574
Quercus lobata 1 6 CH_qlo_556 4 4 0.000000000563593
Rosa chinensis RcHm_v2.0_Chr4 6 CH_rch_568 4 17 0.0000000948581
Salvia bowleyana GWHASIU00000004 6 CH_sbo_610 3 7 0.000192194
Sapria himalayana scaffold33_6547121 6 CH_shi_4 9 26 1.11245e-22
Solanum lycopersicum SL4.0ch05 6 CH_sly_39 8 8 3.30975e-23
Solanum pennellii Spenn-ch05 6 CH_spe_24 7 7 1.04676e-21
Solanum tuberosum ST4.03ch05 6 CH_stu_15 13 30 1.61826e-33
Solanum tuberosum ST4.03ch03 6 CH_stu_460 3 3 0.0000038171
Theobroma cacao Chromosome_2 6 CH_tca_401 3 7 0.00000281512
Trifolium pratense Tp57577_TGAC_v2_LG4 6 CH_tpr_526 3 16 0.0000961153
Vaccinium macrocarpon chr8_Vaccinium_macrocarpon_Stevens_v1 6 CH_vma_59 6 11 0.0000000000000151159
Vigna mungo CM024071.1 6 CH_vmu_44 5 5 0.000000000000261769
Vanilla planifolia CM028160.1 6 CH_vpl_457 4 57 0.0000992617

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001