Functional clusters
Information
- Type InterPro
- Description Multi antimicrobial extrusion protein DinF-like
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Arachis hypogaea | arahy.Tifrunner.gnm1.Arahy.18 | 5 | CH_arhy_1047 | 3 | 7 | 0.000211241 |
| Arachis hypogaea | arahy.Tifrunner.gnm1.Arahy.14 | 5 | CH_arhy_1193 | 3 | 9 | 0.000506645 |
| Coffea canephora | chr9 | 5 | CH_ccan_544 | 2 | 3 | 0.00023424 |
| Coffea canephora | chr6 | 5 | CH_ccan_690 | 2 | 3 | 0.000702709 |
| Ceratophyllum demersum | 2 | 5 | CH_cde_494 | 2 | 2 | 0.000789796 |
| Carpinus fangiana | Cfa02 | 5 | CH_cfa_430 | 3 | 13 | 0.0000859949 |
| Carya illinoinensis | Chr05 | 5 | CH_cil_453 | 3 | 4 | 0.00000380275 |
| Carica papaya | supercontig_20 | 5 | CH_cpa_645 | 2 | 2 | 0.000950661 |
| Chenopodium quinoa | C_Quinoa_Scaffold_1257 | 5 | CH_cqu_494 | 3 | 4 | 0.00000385185 |
| Gossypium hirsutum | A03 | 5 | CH_ghi_581 | 3 | 3 | 0.0000012192 |
| Gossypium hirsutum | D02 | 5 | CH_ghi_582 | 3 | 3 | 0.0000012192 |
| Gossypium raimondii | Chr05 | 5 | CH_gra_304 | 3 | 3 | 0.00000094848 |
| Helianthus annuus | HanXRQChr01 | 5 | CH_han_275 | 5 | 18 | 0.000000000429344 |
| Hydrangea macrophylla | Hma1.2p1_0066F.1 | 5 | CH_hma_278 | 2 | 2 | 0.000111086 |
| Lupinus albus | Lalb_Chr25 | 5 | CH_lal_250 | 3 | 3 | 0.000000908977 |
| Lotus japonicus | chr3 | 5 | CH_lja_262 | 3 | 3 | 0.00000168747 |
| Manihot esculenta | Chromosome09 | 5 | CH_mes_11 | 15 | 16 | 1.67737e-44 |
| Medicago truncatula | chr4 | 5 | CH_mtr_259 | 5 | 9 | 0.00000000000346401 |
| Medicago truncatula | chr8 | 5 | CH_mtr_459 | 4 | 8 | 0.0000000104076 |
| Nelumbo nucifera | chr7 | 5 | CH_nnu_588 | 2 | 2 | 0.000722526 |
| Punica granatum | NC_045128.1 | 5 | CH_pgr_264 | 3 | 3 | 0.00000070945 |
| Quercus lobata | 11 | 5 | CH_qlo_1025 | 3 | 4 | 0.0000035179 |
| Rosa chinensis | RcHm_v2.0_Chr6 | 5 | CH_rch_1043 | 3 | 12 | 0.0000628646 |
| Sequoiadendron giganteum | chr8 | 5 | CH_sgi_1396 | 3 | 4 | 0.00000407161 |
| Sequoiadendron giganteum | chr7 | 5 | CH_sgi_485 | 5 | 7 | 0.00000000000114134 |
| Theobroma cacao | Chromosome_2 | 5 | CH_tca_215 | 4 | 5 | 0.00000000123733 |
| Tarenaya hassleriana | NW_010963495.1 | 5 | CH_tha_123 | 3 | 3 | 0.000000614726 |
| Trifolium pratense | Tp57577_TGAC_v2_LG3 | 5 | CH_tpr_51 | 5 | 5 | 0.000000000000113795 |
| Arachis hypogaea | arahy.Tifrunner.gnm1.Arahy.18 | 6 | CH_arhy_1047 | 3 | 7 | 0.000211241 |
| Arachis hypogaea | arahy.Tifrunner.gnm1.Arahy.14 | 6 | CH_arhy_1193 | 3 | 9 | 0.000506645 |
| Coffea canephora | chr9 | 6 | CH_ccan_544 | 2 | 3 | 0.00023424 |
| Coffea canephora | chr6 | 6 | CH_ccan_690 | 2 | 3 | 0.000702709 |
| Ceratophyllum demersum | 2 | 6 | CH_cde_494 | 2 | 2 | 0.000789796 |
| Carpinus fangiana | Cfa02 | 6 | CH_cfa_430 | 3 | 13 | 0.0000859949 |
| Carya illinoinensis | Chr05 | 6 | CH_cil_453 | 3 | 4 | 0.00000380275 |
| Carica papaya | supercontig_20 | 6 | CH_cpa_645 | 2 | 2 | 0.000950661 |
| Chenopodium quinoa | C_Quinoa_Scaffold_1257 | 6 | CH_cqu_494 | 3 | 4 | 0.00000385185 |
| Gossypium hirsutum | A03 | 6 | CH_ghi_581 | 3 | 3 | 0.0000012192 |
| Gossypium hirsutum | D02 | 6 | CH_ghi_582 | 3 | 3 | 0.0000012192 |
| Gossypium raimondii | Chr05 | 6 | CH_gra_304 | 3 | 3 | 0.00000094848 |
| Helianthus annuus | HanXRQChr01 | 6 | CH_han_275 | 5 | 18 | 0.000000000429344 |
| Hydrangea macrophylla | Hma1.2p1_0066F.1 | 6 | CH_hma_278 | 2 | 2 | 0.000111086 |
| Lupinus albus | Lalb_Chr25 | 6 | CH_lal_250 | 3 | 3 | 0.000000908977 |
| Lotus japonicus | chr3 | 6 | CH_lja_262 | 3 | 3 | 0.00000168747 |
| Manihot esculenta | Chromosome09 | 6 | CH_mes_11 | 15 | 16 | 1.67737e-44 |
| Medicago truncatula | chr4 | 6 | CH_mtr_259 | 5 | 9 | 0.00000000000346401 |
| Medicago truncatula | chr8 | 6 | CH_mtr_459 | 4 | 8 | 0.0000000104076 |
| Nelumbo nucifera | chr7 | 6 | CH_nnu_588 | 2 | 2 | 0.000722526 |
| Punica granatum | NC_045128.1 | 6 | CH_pgr_264 | 3 | 3 | 0.00000070945 |
| Quercus lobata | 11 | 6 | CH_qlo_1025 | 3 | 4 | 0.0000035179 |
| Rosa chinensis | RcHm_v2.0_Chr6 | 6 | CH_rch_1043 | 3 | 12 | 0.0000628646 |
| Sequoiadendron giganteum | chr8 | 6 | CH_sgi_1396 | 3 | 4 | 0.00000407161 |
| Sequoiadendron giganteum | chr7 | 6 | CH_sgi_485 | 5 | 7 | 0.00000000000114134 |
| Theobroma cacao | Chromosome_2 | 6 | CH_tca_215 | 4 | 5 | 0.00000000123733 |
| Tarenaya hassleriana | NW_010963495.1 | 6 | CH_tha_123 | 3 | 3 | 0.000000614726 |
| Trifolium pratense | Tp57577_TGAC_v2_LG3 | 6 | CH_tpr_51 | 5 | 5 | 0.000000000000113795 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |