Functional clusters
Information
- Type InterPro
- Description Transcription factor RADIALIS-like
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Amborella trichopoda | AmTr_v1.0_scaffold00085 | 5 | CH_atr_224 | 3 | 3 | 0.000000189332 |
| Camellia sinensis var. sinensis | Chr9 | 5 | CH_camsi_1138 | 3 | 20 | 0.000200982 |
| Cannabis sativa | NC_044373.1 | 5 | CH_cansat_176 | 4 | 14 | 0.0000000297281 |
| Capsicum annuum | PGAv.1.6.scaffold1226 | 5 | CH_can_616 | 3 | 11 | 0.000141629 |
| Citrullus lanatus | CG_Chr02 | 5 | CH_cla_30 | 5 | 7 | 0.00000000000245763 |
| Cucumis sativus L. | chr7 | 5 | CH_csa_147 | 4 | 7 | 0.0000000128183 |
| Helianthus annuus | HanXRQChr09 | 5 | CH_han_323 | 4 | 8 | 0.00000000254376 |
| Medicago truncatula | chr8 | 5 | CH_mtr_348 | 4 | 4 | 0.000000000284035 |
| Olea europaea | chr15 | 5 | CH_oeu_33 | 6 | 14 | 0.0000000000000270273 |
| Olea europaea | chr14 | 5 | CH_oeu_375 | 3 | 9 | 0.0000788869 |
| Populus trichocarpa | Chr07 | 5 | CH_ptr_770 | 3 | 15 | 0.000650217 |
| Quercus lobata | 6 | 5 | CH_qlo_1001 | 3 | 3 | 0.00000223911 |
| Salvia bowleyana | GWHASIU00000004 | 5 | CH_sbo_107 | 8 | 80 | 0.00000000000000181149 |
| Simmondsia chinensis | GWHAASQ00000015 | 5 | CH_sci_235 | 3 | 8 | 0.0000212956 |
| Sechium edule | LG05 | 5 | CH_sed_106 | 4 | 4 | 0.00000000259286 |
| Sechium edule | LG04 | 5 | CH_sed_39 | 6 | 6 | 5.14805e-16 |
| Solanum pennellii | Spenn-ch12 | 5 | CH_spe_365 | 3 | 4 | 0.00000142427 |
| Solanum tuberosum | ST4.03ch12 | 5 | CH_stu_436 | 3 | 4 | 0.00000189052 |
| Amborella trichopoda | AmTr_v1.0_scaffold00085 | 6 | CH_atr_224 | 3 | 3 | 0.000000189332 |
| Camellia sinensis var. sinensis | Chr9 | 6 | CH_camsi_1138 | 3 | 20 | 0.000200982 |
| Cannabis sativa | NC_044373.1 | 6 | CH_cansat_176 | 4 | 14 | 0.0000000297281 |
| Capsicum annuum | PGAv.1.6.scaffold1226 | 6 | CH_can_616 | 3 | 11 | 0.000141629 |
| Citrullus lanatus | CG_Chr02 | 6 | CH_cla_30 | 5 | 7 | 0.00000000000245763 |
| Cucumis melo | chr01 | 6 | CH_cme_51 | 6 | 11 | 0.00000000000000634191 |
| Cucumis sativus L. | chr7 | 6 | CH_csa_147 | 4 | 7 | 0.0000000128183 |
| Helianthus annuus | HanXRQChr09 | 6 | CH_han_323 | 4 | 8 | 0.00000000254376 |
| Medicago truncatula | chr8 | 6 | CH_mtr_348 | 4 | 4 | 0.000000000284035 |
| Olea europaea | chr15 | 6 | CH_oeu_33 | 6 | 14 | 0.0000000000000270273 |
| Olea europaea | chr14 | 6 | CH_oeu_375 | 3 | 9 | 0.0000788869 |
| Populus trichocarpa | Chr07 | 6 | CH_ptr_770 | 3 | 15 | 0.000650217 |
| Quercus lobata | 6 | 6 | CH_qlo_1001 | 3 | 3 | 0.00000223911 |
| Salvia bowleyana | GWHASIU00000004 | 6 | CH_sbo_107 | 8 | 80 | 0.00000000000000181149 |
| Simmondsia chinensis | GWHAASQ00000015 | 6 | CH_sci_235 | 3 | 8 | 0.0000212956 |
| Sechium edule | LG05 | 6 | CH_sed_106 | 4 | 4 | 0.00000000259286 |
| Sechium edule | LG04 | 6 | CH_sed_39 | 6 | 6 | 5.14805e-16 |
| Solanum pennellii | Spenn-ch12 | 6 | CH_spe_365 | 3 | 4 | 0.00000142427 |
| Solanum tuberosum | ST4.03ch12 | 6 | CH_stu_436 | 3 | 4 | 0.00000189052 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |