Functional clusters
Information
- Type InterPro
- Description WD-repeat protein SPA1/2/3/4
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Acer truncatum | chr9 | 5 | CH_acertr_923 | 2 | 2 | 0.000422982 |
| Brassica oleracea | C4 | 5 | CH_bol_583 | 3 | 19 | 0.0000868557 |
| Brassica rapa | A05 | 5 | CH_bra_619 | 2 | 2 | 0.000901558 |
| Camellia sinensis var. sinensis | Chr12 | 5 | CH_camsi_322 | 5 | 35 | 0.00000000135246 |
| Coffea canephora | chr5 | 5 | CH_ccan_509 | 2 | 4 | 0.000153319 |
| Davidia involucrata | GWHABJS00000013 | 5 | CH_din_768 | 2 | 2 | 0.000500125 |
| Helianthus annuus | HanXRQChr11 | 5 | CH_han_501 | 3 | 3 | 0.000000369592 |
| Lupinus albus | Lalb_Chr04 | 5 | CH_lal_791 | 2 | 2 | 0.000787236 |
| Magnolia biondii | Chr14 | 5 | CH_mbi_456 | 3 | 3 | 0.000000297199 |
| Magnolia biondii | Chr06 | 5 | CH_mbi_828 | 3 | 14 | 0.000108022 |
| Petunia axillaris | Peaxi162Scf00069 | 5 | CH_pax_203 | 3 | 3 | 0.000000148503 |
| Quercus lobata | 8 | 5 | CH_qlo_1611 | 2 | 2 | 0.000309773 |
| Sequoiadendron giganteum | chr3 | 5 | CH_sgi_2489 | 2 | 2 | 0.000487151 |
| Sequoiadendron giganteum | chr1 | 5 | CH_sgi_2490 | 2 | 2 | 0.000487151 |
| Sapria himalayana | scaffold4_21100006 | 5 | CH_shi_412 | 2 | 3 | 0.000171536 |
| Vaccinium macrocarpon | chr11_Vaccinium_macrocarpon_Stevens_v1 | 5 | CH_vma_639 | 2 | 2 | 0.000278772 |
| Vanilla planifolia | CM028161.1 | 5 | CH_vpl_161 | 3 | 3 | 0.000000286631 |
| Vitis vinifera | chr19 | 5 | CH_vvi_307 | 3 | 3 | 0.000000303754 |
| Acer truncatum | chr9 | 6 | CH_acertr_923 | 2 | 2 | 0.000422982 |
| Brassica oleracea | C4 | 6 | CH_bol_583 | 3 | 19 | 0.0000868557 |
| Brassica rapa | A05 | 6 | CH_bra_619 | 2 | 2 | 0.000901558 |
| Camellia sinensis var. sinensis | Chr12 | 6 | CH_camsi_322 | 5 | 35 | 0.00000000135246 |
| Coffea canephora | chr5 | 6 | CH_ccan_509 | 2 | 4 | 0.000153319 |
| Davidia involucrata | GWHABJS00000013 | 6 | CH_din_768 | 2 | 2 | 0.000500125 |
| Helianthus annuus | HanXRQChr11 | 6 | CH_han_501 | 3 | 3 | 0.000000369592 |
| Lupinus albus | Lalb_Chr04 | 6 | CH_lal_791 | 2 | 2 | 0.000787236 |
| Magnolia biondii | Chr14 | 6 | CH_mbi_456 | 3 | 3 | 0.000000297199 |
| Magnolia biondii | Chr06 | 6 | CH_mbi_828 | 3 | 14 | 0.000108022 |
| Petunia axillaris | Peaxi162Scf00069 | 6 | CH_pax_203 | 3 | 3 | 0.000000148503 |
| Quercus lobata | 8 | 6 | CH_qlo_1611 | 2 | 2 | 0.000309773 |
| Sequoiadendron giganteum | chr3 | 6 | CH_sgi_2489 | 2 | 2 | 0.000487151 |
| Sequoiadendron giganteum | chr1 | 6 | CH_sgi_2490 | 2 | 2 | 0.000487151 |
| Sapria himalayana | scaffold4_21100006 | 6 | CH_shi_412 | 2 | 3 | 0.000171536 |
| Vaccinium macrocarpon | chr11_Vaccinium_macrocarpon_Stevens_v1 | 6 | CH_vma_639 | 2 | 2 | 0.000278772 |
| Vanilla planifolia | CM028161.1 | 6 | CH_vpl_161 | 3 | 3 | 0.000000286631 |
| Vitis vinifera | chr19 | 6 | CH_vvi_307 | 3 | 3 | 0.000000303754 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |