Functional clusters
Information
- Type InterPro
- Description Glutathione S-transferase L1/2/3
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Arabidopsis lyrata | scaffold_6 | 5 | CH_aly_515 | 2 | 2 | 0.000198013 |
| Aquilegia oxysepala | CHR02 | 5 | CH_aox_275 | 3 | 9 | 0.0000161963 |
| Aquilegia oxysepala | CHR05 | 5 | CH_aox_379 | 3 | 18 | 0.000157151 |
| Arachis hypogaea | arahy.Tifrunner.gnm1.Arahy.12 | 5 | CH_arhy_1293 | 2 | 2 | 0.000838273 |
| Arachis hypogaea | arahy.Tifrunner.gnm1.Arahy.02 | 5 | CH_arhy_1294 | 2 | 2 | 0.000838273 |
| Arabidopsis thaliana | Chr5 | 5 | CH_ath_418 | 2 | 2 | 0.0000859476 |
| Amborella trichopoda | AmTr_v1.0_scaffold00023 | 5 | CH_atr_153 | 3 | 3 | 0.00000000946662 |
| Brassica napus | C02 | 5 | CH_bna_1076 | 2 | 2 | 0.00011137 |
| Brassica oleracea | C2 | 5 | CH_bol_15 | 6 | 6 | 5.8772e-21 |
| Cicer arietinum L. | Ca_LG3_v3 | 5 | CH_car_290 | 2 | 2 | 0.00023349 |
| Coffea canephora | chr9 | 5 | CH_ccan_58 | 4 | 28 | 0.0000000000203647 |
| Citrus clementina | scaffold_6 | 5 | CH_ccl_348 | 3 | 3 | 0.000000565268 |
| Ceratophyllum demersum | 6 | 5 | CH_cde_300 | 2 | 2 | 0.000236939 |
| Carya illinoinensis | Chr09 | 5 | CH_cil_187 | 4 | 4 | 0.000000000025006 |
| Carica papaya | supercontig_114 | 5 | CH_cpa_119 | 3 | 3 | 0.0000000542279 |
| Capsella rubella | scaffold_6 | 5 | CH_cru_527 | 2 | 2 | 0.000219346 |
| Eucalyptus grandis | Chr01 | 5 | CH_egr_189 | 6 | 6 | 1.29834e-18 |
| Erythranthe guttata | scaffold_10 | 5 | CH_egut_580 | 2 | 2 | 0.000218444 |
| Fragaria vesca | Fvb7 | 5 | CH_fve_753 | 2 | 3 | 0.000530165 |
| Glycine max | Gm13 | 5 | CH_gma_860 | 2 | 2 | 0.000569336 |
| Helianthus annuus | HanXRQChr14 | 5 | CH_han_975 | 2 | 2 | 0.000231857 |
| Lotus japonicus | chr1 | 5 | CH_lja_520 | 2 | 2 | 0.000429046 |
| Lonicera japonica | GWHAAZE00000001 | 5 | CH_lonja_862 | 3 | 14 | 0.000164198 |
| Magnolia biondii | Chr14 | 5 | CH_mbi_279 | 3 | 3 | 0.00000000353808 |
| Malus domestica | Chr04 | 5 | CH_mdo_118 | 5 | 8 | 0.0000000000000486325 |
| Manihot esculenta | Chromosome09 | 5 | CH_mes_673 | 2 | 2 | 0.000610631 |
| Oryza sativa ssp. japonica | chr03 | 5 | CH_osa_196 | 3 | 3 | 0.00000000418381 |
| Punica granatum | NC_045128.1 | 5 | CH_pgr_554 | 2 | 2 | 0.000450214 |
| Pisum sativum | chr6LG2 | 5 | CH_psa_609 | 2 | 2 | 0.000312981 |
| Papaver somniferum | NC_039368.1 | 5 | CH_pso_448 | 3 | 4 | 0.0000000609072 |
| Papaver somniferum | NC_039366.1 | 5 | CH_pso_586 | 3 | 9 | 0.00000127882 |
| Phaseolus vulgaris | Chr07 | 5 | CH_pvu_589 | 2 | 2 | 0.000440836 |
| Quercus lobata | 8 | 5 | CH_qlo_1111 | 3 | 4 | 0.0000130467 |
| Quercus lobata | 7 | 5 | CH_qlo_125 | 8 | 9 | 1.21335e-22 |
| Quercus lobata | 5 | 5 | CH_qlo_580 | 4 | 4 | 0.00000000126344 |
| Rosa chinensis | RcHm_v2.0_Chr3 | 5 | CH_rch_1222 | 2 | 2 | 0.000239192 |
| Rhododendron simsii | chr03 | 5 | CH_rsi_605 | 3 | 10 | 0.0000262117 |
| Sechium edule | LG02 | 5 | CH_sed_160 | 3 | 3 | 0.000000152696 |
| Sequoiadendron giganteum | chr7 | 5 | CH_sgi_2390 | 2 | 3 | 0.000438418 |
| Solanum lycopersicum | SL4.0ch12 | 5 | CH_sly_933 | 2 | 2 | 0.000880411 |
| Schrenkiella parvula | ch6-6 | 5 | CH_spa_282 | 2 | 2 | 0.000236202 |
| Solanum pennellii | Spenn-ch12 | 5 | CH_spe_157 | 4 | 5 | 0.000000000435549 |
| Solanum tuberosum | ST4.03ch09 | 5 | CH_stu_770 | 2 | 2 | 0.000307472 |
| Tarenaya hassleriana | NW_010965775.1 | 5 | CH_tha_235 | 2 | 2 | 0.000209541 |
| Vaccinium macrocarpon | chr5_Vaccinium_macrocarpon_Stevens_v1 | 5 | CH_vma_679 | 2 | 2 | 0.000557543 |
| Vigna mungo | CM024070.1 | 5 | CH_vmu_505 | 2 | 2 | 0.000387685 |
| Zea mays | 1 | 5 | CH_zma_152 | 3 | 3 | 0.0000000392171 |
| Arabidopsis lyrata | scaffold_6 | 6 | CH_aly_515 | 2 | 2 | 0.000198013 |
| Aquilegia oxysepala | CHR02 | 6 | CH_aox_275 | 3 | 9 | 0.0000161963 |
| Aquilegia oxysepala | CHR05 | 6 | CH_aox_379 | 3 | 18 | 0.000157151 |
| Arachis hypogaea | arahy.Tifrunner.gnm1.Arahy.12 | 6 | CH_arhy_1293 | 2 | 2 | 0.000838273 |
| Arachis hypogaea | arahy.Tifrunner.gnm1.Arahy.02 | 6 | CH_arhy_1294 | 2 | 2 | 0.000838273 |
| Arabidopsis thaliana | Chr5 | 6 | CH_ath_418 | 2 | 2 | 0.0000859476 |
| Amborella trichopoda | AmTr_v1.0_scaffold00023 | 6 | CH_atr_153 | 3 | 3 | 0.00000000946662 |
| Brassica napus | C02 | 6 | CH_bna_1076 | 2 | 2 | 0.00011137 |
| Brassica oleracea | C2 | 6 | CH_bol_15 | 6 | 6 | 5.8772e-21 |
| Cicer arietinum L. | Ca_LG3_v3 | 6 | CH_car_290 | 2 | 2 | 0.00023349 |
| Coffea canephora | chr9 | 6 | CH_ccan_58 | 4 | 28 | 0.0000000000203647 |
| Citrus clementina | scaffold_6 | 6 | CH_ccl_348 | 3 | 3 | 0.000000565268 |
| Ceratophyllum demersum | 6 | 6 | CH_cde_300 | 2 | 2 | 0.000236939 |
| Carya illinoinensis | Chr09 | 6 | CH_cil_187 | 4 | 4 | 0.000000000025006 |
| Cucumis melo | chr04 | 6 | CH_cme_160 | 3 | 4 | 0.000000106806 |
| Carica papaya | supercontig_114 | 6 | CH_cpa_119 | 3 | 3 | 0.0000000542279 |
| Capsella rubella | scaffold_6 | 6 | CH_cru_527 | 2 | 2 | 0.000219346 |
| Eucalyptus grandis | Chr01 | 6 | CH_egr_189 | 6 | 6 | 1.29834e-18 |
| Erythranthe guttata | scaffold_10 | 6 | CH_egut_580 | 2 | 2 | 0.000218444 |
| Fragaria x ananassa | Fvb7-4 | 6 | CH_fan_411 | 4 | 37 | 0.000000619964 |
| Fragaria vesca | Fvb7 | 6 | CH_fve_753 | 2 | 3 | 0.000530165 |
| Glycine max | Gm13 | 6 | CH_gma_860 | 2 | 2 | 0.000569336 |
| Helianthus annuus | HanXRQChr14 | 6 | CH_han_975 | 2 | 2 | 0.000231857 |
| Lotus japonicus | chr1 | 6 | CH_lja_520 | 2 | 2 | 0.000429046 |
| Lonicera japonica | GWHAAZE00000001 | 6 | CH_lonja_862 | 3 | 14 | 0.000164198 |
| Magnolia biondii | Chr14 | 6 | CH_mbi_279 | 3 | 3 | 0.00000000353808 |
| Malus domestica | Chr04 | 6 | CH_mdo_118 | 5 | 8 | 0.0000000000000486325 |
| Manihot esculenta | Chromosome09 | 6 | CH_mes_673 | 2 | 2 | 0.000610631 |
| Oryza sativa ssp. japonica | chr03 | 6 | CH_osa_196 | 3 | 3 | 0.00000000418381 |
| Punica granatum | NC_045128.1 | 6 | CH_pgr_554 | 2 | 2 | 0.000450214 |
| Pisum sativum | chr6LG2 | 6 | CH_psa_609 | 2 | 2 | 0.000312981 |
| Papaver somniferum | NC_039368.1 | 6 | CH_pso_448 | 3 | 4 | 0.0000000609072 |
| Papaver somniferum | NC_039366.1 | 6 | CH_pso_586 | 3 | 9 | 0.00000127882 |
| Phaseolus vulgaris | Chr07 | 6 | CH_pvu_589 | 2 | 2 | 0.000440836 |
| Quercus lobata | 8 | 6 | CH_qlo_1111 | 3 | 4 | 0.0000130467 |
| Quercus lobata | 7 | 6 | CH_qlo_125 | 8 | 9 | 1.21335e-22 |
| Quercus lobata | 5 | 6 | CH_qlo_580 | 4 | 4 | 0.00000000126344 |
| Rosa chinensis | RcHm_v2.0_Chr3 | 6 | CH_rch_1222 | 2 | 2 | 0.000239192 |
| Rhododendron simsii | chr03 | 6 | CH_rsi_605 | 3 | 10 | 0.0000262117 |
| Sechium edule | LG02 | 6 | CH_sed_160 | 3 | 3 | 0.000000152696 |
| Sequoiadendron giganteum | chr7 | 6 | CH_sgi_2390 | 2 | 3 | 0.000438418 |
| Solanum lycopersicum | SL4.0ch12 | 6 | CH_sly_933 | 2 | 2 | 0.000880411 |
| Schrenkiella parvula | ch6-6 | 6 | CH_spa_282 | 2 | 2 | 0.000236202 |
| Solanum pennellii | Spenn-ch12 | 6 | CH_spe_157 | 4 | 5 | 0.000000000435549 |
| Solanum tuberosum | ST4.03ch09 | 6 | CH_stu_770 | 2 | 2 | 0.000307472 |
| Tarenaya hassleriana | NW_010965775.1 | 6 | CH_tha_235 | 2 | 2 | 0.000209541 |
| Vaccinium macrocarpon | chr5_Vaccinium_macrocarpon_Stevens_v1 | 6 | CH_vma_679 | 2 | 2 | 0.000557543 |
| Vigna mungo | CM024070.1 | 6 | CH_vmu_505 | 2 | 2 | 0.000387685 |
| Zea mays | 1 | 6 | CH_zma_152 | 3 | 3 | 0.0000000392171 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |