Functional clusters

Information

  • Type InterPro
  • Description Elongation factor 1-gamma, plant

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Actinidia chinensis Lachesis_group7 5 CH_ach_586 2 2 0.000814819
Cannabis sativa NC_044375.1 5 CH_cansat_453 2 2 0.000196993
Corchorus olitorius AWUE01016378.1 5 CH_col_134 2 2 0.000292099
Carica papaya supercontig_113 5 CH_cpa_285 2 2 0.0000950661
Chenopodium quinoa C_Quinoa_Scaffold_2389 5 CH_cqu_917 2 2 0.000473821
Cucumis sativus L. chr3 5 CH_csa_333 2 2 0.0000834759
Durio zibethinus NW_019167915.1 5 CH_dzi_480 2 2 0.000278093
Erigeron canadensis Conyza_canadensis_scaffold:4 5 CH_eca_619 2 2 0.000134617
Gossypium hirsutum A12 5 CH_ghi_1173 2 3 0.000480613
Gossypium hirsutum D12 5 CH_ghi_943 2 2 0.000160209
Gossypium raimondii Chr08 5 CH_gra_417 2 2 0.0000536107
Lactuca sativa Lsat_1_v8_lg_5 5 CH_lsa_799 2 3 0.000462586
Oryza sativa ssp. japonica chr02 5 CH_osa_575 2 2 0.000158437
Papaver somniferum NC_039365.1 5 CH_pso_471 3 4 0.000000106587
Quercus lobata CM012294 5 CH_qlo_329 6 17 0.0000000000000471334
Quercus lobata 9 5 CH_qlo_917 3 3 0.000000659739
Rosa chinensis RcHm_v2.0_Chr7 5 CH_rch_52 12 75 4.47272e-27
Salvia bowleyana GWHASIU00000005 5 CH_sbo_676 2 3 0.000409466
Solanum lycopersicum SL4.0ch11 5 CH_sly_693 2 2 0.000176082
Solanum pennellii Spenn-ch11 5 CH_spe_871 2 4 0.000800563
Selenicereus undatus Scaffold_2055 5 CH_sun_350 2 3 0.000653935
Theobroma cacao Chromosome_2 5 CH_tca_667 2 3 0.000439399
Vaccinium macrocarpon chr5_Vaccinium_macrocarpon_Stevens_v1 5 CH_vma_123 4 6 0.00000000126353
Vanilla planifolia CM028154.1 5 CH_vpl_525 2 2 0.000221664
Vitis vinifera chr12 5 CH_vvi_246 3 3 0.0000000347148
Actinidia chinensis Lachesis_group7 6 CH_ach_586 2 2 0.000814819
Cannabis sativa NC_044375.1 6 CH_cansat_453 2 2 0.000196993
Cucumis melo chr06 6 CH_cme_356 2 2 0.000200133
Corchorus olitorius AWUE01016378.1 6 CH_col_134 2 2 0.000292099
Carica papaya supercontig_113 6 CH_cpa_285 2 2 0.0000950661
Chenopodium quinoa C_Quinoa_Scaffold_2389 6 CH_cqu_917 2 2 0.000473821
Cucumis sativus L. chr3 6 CH_csa_333 2 2 0.0000834759
Durio zibethinus NW_019167915.1 6 CH_dzi_480 2 2 0.000278093
Erigeron canadensis Conyza_canadensis_scaffold:4 6 CH_eca_619 2 2 0.000134617
Gossypium hirsutum A12 6 CH_ghi_1173 2 3 0.000480613
Gossypium hirsutum D12 6 CH_ghi_943 2 2 0.000160209
Gossypium raimondii Chr08 6 CH_gra_417 2 2 0.0000536107
Lactuca sativa Lsat_1_v8_lg_5 6 CH_lsa_799 2 3 0.000462586
Oryza sativa ssp. japonica chr02 6 CH_osa_575 2 2 0.000158437
Papaver somniferum NC_039365.1 6 CH_pso_471 3 4 0.000000106587
Quercus lobata CM012294 6 CH_qlo_329 6 17 0.0000000000000471334
Quercus lobata 9 6 CH_qlo_917 3 3 0.000000659739
Rosa chinensis RcHm_v2.0_Chr7 6 CH_rch_52 12 75 4.47272e-27
Salvia bowleyana GWHASIU00000005 6 CH_sbo_676 2 3 0.000409466
Solanum lycopersicum SL4.0ch11 6 CH_sly_693 2 2 0.000176082
Solanum pennellii Spenn-ch11 6 CH_spe_871 2 4 0.000800563
Selenicereus undatus Scaffold_2055 6 CH_sun_350 2 3 0.000653935
Theobroma cacao Chromosome_2 6 CH_tca_667 2 3 0.000439399
Vaccinium macrocarpon chr5_Vaccinium_macrocarpon_Stevens_v1 6 CH_vma_123 4 6 0.00000000126353
Vanilla planifolia CM028154.1 6 CH_vpl_525 2 2 0.000221664
Vitis vinifera chr12 6 CH_vvi_246 3 3 0.0000000347148

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001