Functional clusters
Information
- Type InterPro
- Description NADPH-dependent oxidoreductase AOR-like
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Anthoceros agrestis | Sc2ySwM_228 | 5 | CH_aag_156 | 3 | 9 | 0.0000162197 |
| Avicennia marina | ScioBoG_102834_HRSCAF_103055 | 5 | CH_ama_209 | 2 | 2 | 0.000517331 |
| Arachis hypogaea | arahy.Tifrunner.gnm1.Arahy.15 | 5 | CH_arhy_391 | 4 | 6 | 0.00000000287305 |
| Arachis hypogaea | arahy.Tifrunner.gnm1.Arahy.05 | 5 | CH_arhy_617 | 3 | 3 | 0.000000914243 |
| Arachis hypogaea | arahy.Tifrunner.gnm1.Arahy.06 | 5 | CH_arhy_618 | 3 | 3 | 0.000000914243 |
| Camellia sinensis var. sinensis | Chr3 | 5 | CH_camsi_727 | 3 | 13 | 0.00000360679 |
| Corylus avellana | 5 | 5 | CH_cav_746 | 2 | 2 | 0.000460017 |
| Citrus clementina | scaffold_2 | 5 | CH_ccl_733 | 2 | 2 | 0.000492187 |
| Carpinus fangiana | Cfa03 | 5 | CH_cfa_210 | 3 | 3 | 0.0000000344157 |
| Cardamine hirsuta | Chr1 | 5 | CH_chi_101 | 4 | 4 | 0.0000000000009908 |
| Carya illinoinensis | Chr03 | 5 | CH_cil_765 | 2 | 2 | 0.000371897 |
| Durio zibethinus | NW_019167960.1 | 5 | CH_dzi_585 | 2 | 2 | 0.000695233 |
| Eucalyptus grandis | Chr09 | 5 | CH_egr_89 | 8 | 8 | 3.33662e-26 |
| Fragaria vesca | Fvb6 | 5 | CH_fve_654 | 2 | 2 | 0.00017673 |
| Glycine max | Gm19 | 5 | CH_gma_124 | 4 | 4 | 0.00000000000574176 |
| Helianthus annuus | HanXRQChr08 | 5 | CH_han_358 | 3 | 3 | 0.0000000089598 |
| Lupinus albus | Lalb_Chr10 | 5 | CH_lal_549 | 2 | 2 | 0.000157447 |
| Lotus japonicus | chr2 | 5 | CH_lja_613 | 2 | 2 | 0.000715077 |
| Malus domestica | Chr09 | 5 | CH_mdo_67 | 6 | 9 | 3.11216e-17 |
| Medicago truncatula | chr6 | 5 | CH_mtr_355 | 4 | 6 | 0.000000000393199 |
| Olea europaea | chr12 | 5 | CH_oeu_64 | 4 | 5 | 0.000000000159692 |
| Punica granatum | NC_045128.1 | 5 | CH_pgr_570 | 2 | 2 | 0.000450214 |
| Prunus persica | Pp03 | 5 | CH_ppe_50 | 7 | 7 | 1.08614e-22 |
| Phaseolus vulgaris | Chr04 | 5 | CH_pvu_632 | 2 | 2 | 0.000440836 |
| Quercus lobata | CM012294 | 5 | CH_qlo_1806 | 2 | 2 | 0.000774433 |
| Rosa chinensis | RcHm_v2.0_Chr2 | 5 | CH_rch_355 | 4 | 8 | 0.00000000019954 |
| Salvia bowleyana | GWHASIU00000004 | 5 | CH_sbo_593 | 2 | 2 | 0.000136494 |
| Salix brachista | GWHAAZH00000008 | 5 | CH_sbr_558 | 2 | 2 | 0.000189042 |
| Sequoiadendron giganteum | chr4 | 5 | CH_sgi_47 | 11 | 11 | 4.00963e-36 |
| Theobroma cacao | Chromosome_4 | 5 | CH_tca_278 | 3 | 3 | 0.0000000321845 |
| Vaccinium macrocarpon | chr3_Vaccinium_macrocarpon_Stevens_v1 | 5 | CH_vma_208 | 3 | 3 | 0.000000129529 |
| Vigna mungo | CM024077.1 | 5 | CH_vmu_172 | 3 | 3 | 0.000000125253 |
| Anthoceros agrestis | Sc2ySwM_228 | 6 | CH_aag_156 | 3 | 9 | 0.0000162197 |
| Avicennia marina | ScioBoG_102834_HRSCAF_103055 | 6 | CH_ama_209 | 2 | 2 | 0.000517331 |
| Arachis hypogaea | arahy.Tifrunner.gnm1.Arahy.15 | 6 | CH_arhy_391 | 4 | 6 | 0.00000000287305 |
| Arachis hypogaea | arahy.Tifrunner.gnm1.Arahy.05 | 6 | CH_arhy_617 | 3 | 3 | 0.000000914243 |
| Arachis hypogaea | arahy.Tifrunner.gnm1.Arahy.06 | 6 | CH_arhy_618 | 3 | 3 | 0.000000914243 |
| Camellia sinensis var. sinensis | Chr3 | 6 | CH_camsi_727 | 3 | 13 | 0.00000360679 |
| Corylus avellana | 5 | 6 | CH_cav_746 | 2 | 2 | 0.000460017 |
| Citrus clementina | scaffold_2 | 6 | CH_ccl_733 | 2 | 2 | 0.000492187 |
| Carpinus fangiana | Cfa03 | 6 | CH_cfa_210 | 3 | 3 | 0.0000000344157 |
| Cardamine hirsuta | Chr1 | 6 | CH_chi_101 | 4 | 4 | 0.0000000000009908 |
| Carya illinoinensis | Chr03 | 6 | CH_cil_765 | 2 | 2 | 0.000371897 |
| Durio zibethinus | NW_019167960.1 | 6 | CH_dzi_585 | 2 | 2 | 0.000695233 |
| Eucalyptus grandis | Chr09 | 6 | CH_egr_89 | 8 | 8 | 3.33662e-26 |
| Fragaria vesca | Fvb6 | 6 | CH_fve_654 | 2 | 2 | 0.00017673 |
| Glycine max | Gm19 | 6 | CH_gma_124 | 4 | 4 | 0.00000000000574176 |
| Helianthus annuus | HanXRQChr08 | 6 | CH_han_358 | 3 | 3 | 0.0000000089598 |
| Lupinus albus | Lalb_Chr10 | 6 | CH_lal_549 | 2 | 2 | 0.000157447 |
| Lotus japonicus | chr2 | 6 | CH_lja_613 | 2 | 2 | 0.000715077 |
| Malus domestica | Chr09 | 6 | CH_mdo_67 | 6 | 9 | 3.11216e-17 |
| Medicago truncatula | chr6 | 6 | CH_mtr_355 | 4 | 6 | 0.000000000393199 |
| Olea europaea | chr12 | 6 | CH_oeu_64 | 4 | 5 | 0.000000000159692 |
| Punica granatum | NC_045128.1 | 6 | CH_pgr_570 | 2 | 2 | 0.000450214 |
| Prunus persica | Pp03 | 6 | CH_ppe_50 | 7 | 7 | 1.08614e-22 |
| Phaseolus vulgaris | Chr04 | 6 | CH_pvu_632 | 2 | 2 | 0.000440836 |
| Quercus lobata | CM012294 | 6 | CH_qlo_1806 | 2 | 2 | 0.000774433 |
| Rosa chinensis | RcHm_v2.0_Chr2 | 6 | CH_rch_355 | 4 | 8 | 0.00000000019954 |
| Salvia bowleyana | GWHASIU00000004 | 6 | CH_sbo_593 | 2 | 2 | 0.000136494 |
| Salix brachista | GWHAAZH00000008 | 6 | CH_sbr_558 | 2 | 2 | 0.000189042 |
| Sequoiadendron giganteum | chr4 | 6 | CH_sgi_47 | 11 | 11 | 4.00963e-36 |
| Theobroma cacao | Chromosome_4 | 6 | CH_tca_278 | 3 | 3 | 0.0000000321845 |
| Vaccinium macrocarpon | chr3_Vaccinium_macrocarpon_Stevens_v1 | 6 | CH_vma_208 | 3 | 3 | 0.000000129529 |
| Vigna mungo | CM024077.1 | 6 | CH_vmu_172 | 3 | 3 | 0.000000125253 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |