Functional clusters
Information
- Type InterPro
- Description RING-H2 finger protein ATL10/ATL75-79
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Acer truncatum | chr4 | 5 | CH_acertr_391 | 4 | 60 | 0.00000255387 |
| Arabidopsis lyrata | scaffold_1 | 5 | CH_aly_110 | 4 | 4 | 0.0000000000603923 |
| Amaranthus hybridus | AmaHy_arrow1_Scaffold_3 | 5 | CH_amhyb_127 | 3 | 4 | 0.000000850173 |
| Amaranthus hybridus | AmaHy_arrow1_Scaffold_2 | 5 | CH_amhyb_164 | 3 | 6 | 0.0000042497 |
| Aquilegia oxysepala | CHR05 | 5 | CH_aox_534 | 2 | 3 | 0.000721742 |
| Arabidopsis thaliana | Chr1 | 5 | CH_ath_101 | 4 | 6 | 0.0000000000370334 |
| Brassica carinata | ChrC08 | 5 | CH_bca_375 | 4 | 6 | 0.00000000656902 |
| Brassica carinata | ChrB04 | 5 | CH_bca_827 | 3 | 3 | 0.00000178213 |
| Brassica carinata | ChrB07 | 5 | CH_bca_998 | 3 | 4 | 0.00000712713 |
| Brassica napus | C06 | 5 | CH_bna_359 | 4 | 7 | 0.0000000117786 |
| Brassica napus | A06 | 5 | CH_bna_618 | 3 | 3 | 0.00000151166 |
| Brassica napus | C08 | 5 | CH_bna_754 | 3 | 4 | 0.00000604558 |
| Brassica oleracea | C6 | 5 | CH_bol_362 | 3 | 4 | 0.00000183312 |
| Beta vulgaris | Chr6_EL10_PGA_scaffold0 | 5 | CH_bvu_39 | 5 | 6 | 0.00000000000000211471 |
| Cicer arietinum L. | Ca_LG6_v3 | 5 | CH_car_61 | 3 | 3 | 0.0000000363466 |
| Citrus clementina | scaffold_7 | 5 | CH_ccl_57 | 7 | 9 | 6.91376e-21 |
| Cardamine hirsuta | Chr1 | 5 | CH_chi_287 | 3 | 3 | 0.000000250835 |
| Corchorus olitorius | AWUE01017966.1 | 5 | CH_col_71 | 3 | 3 | 0.000000512005 |
| Carica papaya | supercontig_42 | 5 | CH_cpa_116 | 3 | 4 | 0.0000000542253 |
| Chenopodium quinoa | C_Quinoa_Scaffold_3086 | 5 | CH_cqu_769 | 2 | 2 | 0.000142146 |
| Durio zibethinus | NW_019168470.1 | 5 | CH_dzi_211 | 3 | 3 | 0.000000270682 |
| Eucalyptus grandis | Chr09 | 5 | CH_egr_1201 | 2 | 2 | 0.000175582 |
| Eutrema salsugineum | scaffold_7 | 5 | CH_esa_150 | 4 | 11 | 0.0000000305706 |
| Gossypium hirsutum | A05 | 5 | CH_ghi_110 | 7 | 10 | 8.39308e-19 |
| Gossypium hirsutum | D04 | 5 | CH_ghi_73 | 8 | 9 | 1.34531e-23 |
| Helianthus annuus | HanXRQChr09 | 5 | CH_han_389 | 3 | 3 | 0.0000000223995 |
| Lupinus albus | Lalb_Chr13 | 5 | CH_lal_197 | 3 | 3 | 0.00000014461 |
| Lotus japonicus | chr4 | 5 | CH_lja_153 | 3 | 3 | 0.0000000306812 |
| Lactuca sativa | Lsat_1_v8_lg_4 | 5 | CH_lsa_70 | 6 | 11 | 3.73013e-18 |
| Magnolia biondii | Chr09 | 5 | CH_mbi_410 | 3 | 5 | 0.000000141511 |
| Medicago truncatula | chr8 | 5 | CH_mtr_79 | 7 | 11 | 1.00024e-21 |
| Olea europaea | chr18 | 5 | CH_oeu_185 | 3 | 5 | 0.000000854666 |
| Petunia axillaris | Peaxi162Scf00025 | 5 | CH_pax_138 | 3 | 3 | 0.00000000742514 |
| Pisum sativum | chr7LG7 | 5 | CH_psa_7 | 10 | 31 | 5.92909e-26 |
| Papaver somniferum | NC_039363.1 | 5 | CH_pso_1267 | 2 | 2 | 0.000811057 |
| Papaver somniferum | NC_039358.1 | 5 | CH_pso_555 | 3 | 5 | 0.000000639469 |
| Populus trichocarpa | Chr01 | 5 | CH_ptr_318 | 3 | 3 | 0.000000100229 |
| Populus trichocarpa | Chr19 | 5 | CH_ptr_809 | 2 | 2 | 0.000867002 |
| Quercus lobata | 6 | 5 | CH_qlo_1610 | 2 | 2 | 0.000309773 |
| Salix brachista | GWHAAZH00000019 | 5 | CH_sbr_389 | 4 | 58 | 0.0000110833 |
| Solanum lycopersicum | SL4.0ch11 | 5 | CH_sly_77 | 5 | 5 | 8.90255e-17 |
| Schrenkiella parvula | ch1-2 | 5 | CH_spa_116 | 3 | 3 | 0.000000185978 |
| Solanum pennellii | Spenn-ch11 | 5 | CH_spe_47 | 5 | 5 | 2.9359e-17 |
| Solanum tuberosum | ST4.03ch11 | 5 | CH_stu_49 | 6 | 6 | 7.95357e-21 |
| Trochodendron aralioides | group5 | 5 | CH_tar_279 | 3 | 3 | 0.000000189236 |
| Theobroma cacao | Chromosome_1 | 5 | CH_tca_277 | 3 | 3 | 0.0000000321845 |
| Tarenaya hassleriana | NW_010967219.1 | 5 | CH_tha_304 | 2 | 2 | 0.000419082 |
| Trifolium pratense | Tp57577_TGAC_v2_LG3 | 5 | CH_tpr_18 | 6 | 6 | 3.91605e-19 |
| Tripterygium wilfordii | NC_052233.1 | 5 | CH_twi_190 | 3 | 3 | 0.000000261091 |
| Acer truncatum | chr4 | 6 | CH_acertr_391 | 4 | 60 | 0.00000255387 |
| Arabidopsis lyrata | scaffold_1 | 6 | CH_aly_110 | 4 | 4 | 0.0000000000603923 |
| Amaranthus hybridus | AmaHy_arrow1_Scaffold_3 | 6 | CH_amhyb_127 | 3 | 4 | 0.000000850173 |
| Amaranthus hybridus | AmaHy_arrow1_Scaffold_2 | 6 | CH_amhyb_164 | 3 | 6 | 0.0000042497 |
| Aquilegia oxysepala | CHR05 | 6 | CH_aox_534 | 2 | 3 | 0.000721742 |
| Arabidopsis thaliana | Chr1 | 6 | CH_ath_101 | 4 | 6 | 0.0000000000370334 |
| Brassica carinata | ChrC08 | 6 | CH_bca_375 | 4 | 6 | 0.00000000656902 |
| Brassica carinata | ChrB04 | 6 | CH_bca_827 | 3 | 3 | 0.00000178213 |
| Brassica carinata | ChrB07 | 6 | CH_bca_998 | 3 | 4 | 0.00000712713 |
| Brassica napus | C06 | 6 | CH_bna_359 | 4 | 7 | 0.0000000117786 |
| Brassica napus | A06 | 6 | CH_bna_618 | 3 | 3 | 0.00000151166 |
| Brassica napus | C08 | 6 | CH_bna_754 | 3 | 4 | 0.00000604558 |
| Brassica oleracea | C6 | 6 | CH_bol_362 | 3 | 4 | 0.00000183312 |
| Beta vulgaris | Chr6_EL10_PGA_scaffold0 | 6 | CH_bvu_39 | 5 | 6 | 0.00000000000000211471 |
| Cicer arietinum L. | Ca_LG6_v3 | 6 | CH_car_61 | 3 | 3 | 0.0000000363466 |
| Citrus clementina | scaffold_7 | 6 | CH_ccl_57 | 7 | 9 | 6.91376e-21 |
| Cardamine hirsuta | Chr1 | 6 | CH_chi_287 | 3 | 3 | 0.000000250835 |
| Corchorus olitorius | AWUE01017966.1 | 6 | CH_col_71 | 3 | 3 | 0.000000512005 |
| Carica papaya | supercontig_42 | 6 | CH_cpa_116 | 3 | 4 | 0.0000000542253 |
| Chenopodium quinoa | C_Quinoa_Scaffold_3086 | 6 | CH_cqu_769 | 2 | 2 | 0.000142146 |
| Durio zibethinus | NW_019168470.1 | 6 | CH_dzi_211 | 3 | 3 | 0.000000270682 |
| Eucalyptus grandis | Chr09 | 6 | CH_egr_1201 | 2 | 2 | 0.000175582 |
| Eutrema salsugineum | scaffold_7 | 6 | CH_esa_150 | 4 | 11 | 0.0000000305706 |
| Gossypium hirsutum | A05 | 6 | CH_ghi_110 | 7 | 10 | 8.39308e-19 |
| Gossypium hirsutum | D04 | 6 | CH_ghi_73 | 8 | 9 | 1.34531e-23 |
| Helianthus annuus | HanXRQChr09 | 6 | CH_han_389 | 3 | 3 | 0.0000000223995 |
| Lupinus albus | Lalb_Chr13 | 6 | CH_lal_197 | 3 | 3 | 0.00000014461 |
| Lotus japonicus | chr4 | 6 | CH_lja_153 | 3 | 3 | 0.0000000306812 |
| Lactuca sativa | Lsat_1_v8_lg_4 | 6 | CH_lsa_70 | 6 | 11 | 3.73013e-18 |
| Magnolia biondii | Chr09 | 6 | CH_mbi_410 | 3 | 5 | 0.000000141511 |
| Medicago truncatula | chr8 | 6 | CH_mtr_79 | 7 | 11 | 1.00024e-21 |
| Olea europaea | chr18 | 6 | CH_oeu_185 | 3 | 5 | 0.000000854666 |
| Petunia axillaris | Peaxi162Scf00025 | 6 | CH_pax_138 | 3 | 3 | 0.00000000742514 |
| Pisum sativum | chr7LG7 | 6 | CH_psa_7 | 10 | 31 | 5.92909e-26 |
| Papaver somniferum | NC_039363.1 | 6 | CH_pso_1267 | 2 | 2 | 0.000811057 |
| Papaver somniferum | NC_039358.1 | 6 | CH_pso_555 | 3 | 5 | 0.000000639469 |
| Populus trichocarpa | Chr01 | 6 | CH_ptr_318 | 3 | 3 | 0.000000100229 |
| Populus trichocarpa | Chr19 | 6 | CH_ptr_809 | 2 | 2 | 0.000867002 |
| Quercus lobata | 6 | 6 | CH_qlo_1610 | 2 | 2 | 0.000309773 |
| Salix brachista | GWHAAZH00000019 | 6 | CH_sbr_389 | 4 | 58 | 0.0000110833 |
| Solanum lycopersicum | SL4.0ch11 | 6 | CH_sly_77 | 5 | 5 | 8.90255e-17 |
| Schrenkiella parvula | ch1-2 | 6 | CH_spa_116 | 3 | 3 | 0.000000185978 |
| Solanum pennellii | Spenn-ch11 | 6 | CH_spe_47 | 5 | 5 | 2.9359e-17 |
| Solanum tuberosum | ST4.03ch11 | 6 | CH_stu_49 | 6 | 6 | 7.95357e-21 |
| Trochodendron aralioides | group5 | 6 | CH_tar_279 | 3 | 3 | 0.000000189236 |
| Theobroma cacao | Chromosome_1 | 6 | CH_tca_277 | 3 | 3 | 0.0000000321845 |
| Tarenaya hassleriana | NW_010967219.1 | 6 | CH_tha_304 | 2 | 2 | 0.000419082 |
| Trifolium pratense | Tp57577_TGAC_v2_LG3 | 6 | CH_tpr_18 | 6 | 6 | 3.91605e-19 |
| Tripterygium wilfordii | NC_052233.1 | 6 | CH_twi_190 | 3 | 3 | 0.000000261091 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |