Functional clusters

Information

  • Type InterPro
  • Description F-box/kelch-repeat protein KMD1/2-like

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Acer truncatum chr3 5 CH_acertr_795 2 2 0.000211491
Actinidia chinensis Lachesis_group1 5 CH_ach_555 2 2 0.000543213
Camellia sinensis var. sinensis Chr15 5 CH_camsi_1362 2 2 0.000458547
Capsicum annuum PGAv.1.6.scaffold438 5 CH_can_798 2 2 0.000495663
Carya illinoinensis Chr01 5 CH_cil_692 2 2 0.000185948
Carica papaya supercontig_10 5 CH_cpa_520 2 2 0.000285198
Durio zibethinus NW_019167982.1 5 CH_dzi_648 2 2 0.000973326
Eucalyptus grandis Chr10 5 CH_egr_438 4 4 0.0000000000210526
Fragaria vesca Fvb6 5 CH_fve_729 2 2 0.000353461
Medicago truncatula chr2 5 CH_mtr_1192 2 2 0.000246518
Petunia axillaris Peaxi162Scf00015 5 CH_pax_716 2 2 0.000703556
Punica granatum NC_045129.1 5 CH_pgr_73 5 5 0.000000000000059928
Papaver somniferum NC_039364.1 5 CH_pso_167 5 9 0.000000000000192774
Papaver somniferum NC_039365.1 5 CH_pso_180 5 10 0.000000000000385519
Rosa chinensis RcHm_v2.0_Chr2 5 CH_rch_1438 2 3 0.000717541
Rhododendron simsii chr12 5 CH_rsi_298 4 7 0.00000000197448
Sequoiadendron giganteum chr7 5 CH_sgi_1021 4 4 0.0000000516793
Sequoiadendron giganteum chr7 5 CH_sgi_1434 5 30 0.00000720303
Sequoiadendron giganteum chr1 5 CH_sgi_1465 4 10 0.0000107991
Sequoiadendron giganteum chr3 5 CH_sgi_212 10 24 6.78166e-20
Sequoiadendron giganteum HRSCAF_1 5 CH_sgi_588 6 11 0.0000000000231378
Solanum lycopersicum SL4.0ch03 5 CH_sly_830 2 2 0.000352164
Solanum pennellii Spenn-ch03 5 CH_spe_741 2 2 0.000266874
Solanum tuberosum ST4.03ch06 5 CH_stu_338 3 3 0.0000000787843
Solanum tuberosum ST4.03ch03 5 CH_stu_936 2 2 0.000768679
Theobroma cacao Chromosome_6 5 CH_tca_698 2 2 0.000439432
Trifolium pratense Tp57577_TGAC_v2_LG4 5 CH_tpr_711 2 2 0.000454184
Utricularia gibba unitig_0 5 CH_ugi_287 2 2 0.000246144
Vaccinium macrocarpon chr4_Vaccinium_macrocarpon_Stevens_v1 5 CH_vma_817 2 2 0.000929238
Vaccinium macrocarpon chr5_Vaccinium_macrocarpon_Stevens_v1 5 CH_vma_818 2 2 0.000929238
Vanilla planifolia CM028150.1 5 CH_vpl_641 2 2 0.000443328
Acer truncatum chr3 6 CH_acertr_795 2 2 0.000211491
Actinidia chinensis Lachesis_group1 6 CH_ach_555 2 2 0.000543213
Camellia sinensis var. sinensis Chr15 6 CH_camsi_1362 2 2 0.000458547
Capsicum annuum PGAv.1.6.scaffold438 6 CH_can_798 2 2 0.000495663
Carya illinoinensis Chr01 6 CH_cil_692 2 2 0.000185948
Carica papaya supercontig_10 6 CH_cpa_520 2 2 0.000285198
Durio zibethinus NW_019167982.1 6 CH_dzi_648 2 2 0.000973326
Eucalyptus grandis Chr10 6 CH_egr_438 4 4 0.0000000000210526
Fragaria vesca Fvb6 6 CH_fve_729 2 2 0.000353461
Medicago truncatula chr2 6 CH_mtr_1192 2 2 0.000246518
Petunia axillaris Peaxi162Scf00015 6 CH_pax_716 2 2 0.000703556
Punica granatum NC_045129.1 6 CH_pgr_73 5 5 0.000000000000059928
Papaver somniferum NC_039364.1 6 CH_pso_167 5 9 0.000000000000192774
Papaver somniferum NC_039365.1 6 CH_pso_180 5 10 0.000000000000385519
Rosa chinensis RcHm_v2.0_Chr2 6 CH_rch_1438 2 3 0.000717541
Rhododendron simsii chr12 6 CH_rsi_298 4 7 0.00000000197448
Sequoiadendron giganteum chr7 6 CH_sgi_1021 4 4 0.0000000516793
Sequoiadendron giganteum chr7 6 CH_sgi_1434 5 30 0.00000720303
Sequoiadendron giganteum chr1 6 CH_sgi_1465 4 10 0.0000107991
Sequoiadendron giganteum chr3 6 CH_sgi_212 10 24 6.78166e-20
Sequoiadendron giganteum HRSCAF_1 6 CH_sgi_588 6 11 0.0000000000231378
Solanum lycopersicum SL4.0ch03 6 CH_sly_830 2 2 0.000352164
Solanum pennellii Spenn-ch03 6 CH_spe_741 2 2 0.000266874
Solanum tuberosum ST4.03ch06 6 CH_stu_338 3 3 0.0000000787843
Solanum tuberosum ST4.03ch03 6 CH_stu_936 2 2 0.000768679
Theobroma cacao Chromosome_6 6 CH_tca_698 2 2 0.000439432
Trifolium pratense Tp57577_TGAC_v2_LG4 6 CH_tpr_711 2 2 0.000454184
Utricularia gibba unitig_0 6 CH_ugi_287 2 2 0.000246144
Vaccinium macrocarpon chr4_Vaccinium_macrocarpon_Stevens_v1 6 CH_vma_817 2 2 0.000929238
Vaccinium macrocarpon chr5_Vaccinium_macrocarpon_Stevens_v1 6 CH_vma_818 2 2 0.000929238
Vanilla planifolia CM028150.1 6 CH_vpl_641 2 2 0.000443328

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001