Functional clusters

Information

  • Type InterPro
  • Description E3 ubiquitin-protein ligase APD1/2/3/4

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Avicennia marina ScioBoG_3895_HRSCAF_3912 5 CH_ama_208 2 2 0.000517331
Brassica carinata ChrC06 5 CH_bca_872 3 5 0.00000249449
Lupinus albus Lalb_Chr08 5 CH_lal_644 2 2 0.000314895
Lupinus albus Lalb_Chr19 5 CH_lal_645 2 2 0.000314895
Lonicera japonica GWHAAZE00000004 5 CH_lonja_1093 2 2 0.000359324
Striga asiatica scaffold15 5 CH_sas_203 2 2 0.000375223
Simmondsia chinensis GWHAASQ00000002 5 CH_sci_542 2 2 0.000851426
Selenicereus undatus Scaffold_33675 5 CH_sun_400 2 2 0.000726639
Avicennia marina ScioBoG_3895_HRSCAF_3912 6 CH_ama_208 2 2 0.000517331
Brassica carinata ChrC06 6 CH_bca_872 3 5 0.00000249449
Lupinus albus Lalb_Chr08 6 CH_lal_644 2 2 0.000314895
Lupinus albus Lalb_Chr19 6 CH_lal_645 2 2 0.000314895
Lonicera japonica GWHAAZE00000004 6 CH_lonja_1093 2 2 0.000359324
Striga asiatica scaffold15 6 CH_sas_203 2 2 0.000375223
Simmondsia chinensis GWHAASQ00000002 6 CH_sci_542 2 2 0.000851426
Selenicereus undatus Scaffold_33675 6 CH_sun_400 2 2 0.000726639

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001