Functional clusters

Information

  • Type InterPro
  • Description E3 ubiquitin-protein ligase SINA-like, plant

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Acer truncatum chr1 5 CH_acertr_196 3 3 0.000000007455
Actinidia chinensis Lachesis_group21 5 CH_ach_477 2 2 0.000325928
Arabidopsis lyrata scaffold_2 5 CH_aly_174 4 5 0.0000000102628
Arabidopsis lyrata scaffold_7 5 CH_aly_73 6 11 0.000000000000160941
Arabidopsis lyrata scaffold_7 5 CH_aly_81 5 5 0.000000000000881028
Avicennia marina ScioBoG_102836_HRSCAF_103072 5 CH_ama_176 2 2 0.000258665
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.14 5 CH_arhy_1113 2 2 0.000299383
Arabidopsis thaliana Chr5 5 CH_ath_124 5 40 0.00000000041803
Brassica carinata ChrC08 5 CH_bca_1039 3 3 0.0000090779
Brassica carinata ChrB03 5 CH_bca_1385 3 5 0.0000907174
Brassica carinata ChrB03 5 CH_bca_507 4 6 0.0000000596305
Brassica napus A04 5 CH_bna_853 3 5 0.0000169244
Brassica oleracea C6 5 CH_bol_444 3 5 0.0000108936
Brassica oleracea C4 5 CH_bol_84 5 8 0.00000000000296526
Beta vulgaris Chr2_EL10_PGA_scaffold6 5 CH_bvu_368 2 2 0.0000827917
Camellia sinensis var. sinensis Chr1 5 CH_camsi_400 3 3 0.0000000126162
Capsicum annuum PGAv.1.6.scaffold11 5 CH_can_763 2 4 0.000495622
Corylus avellana 5 5 CH_cav_548 2 2 0.0000766695
Citrus clementina scaffold_6 5 CH_ccl_62 6 6 8.3609e-20
Cardamine hirsuta Chr7 5 CH_chi_25 10 18 7.20751e-24
Cardamine hirsuta Chr2 5 CH_chi_31 9 12 8.07922e-23
Carica papaya supercontig_116 5 CH_cpa_401 2 2 0.0000950661
Capsella rubella scaffold_7 5 CH_cru_113 6 10 0.0000000000191625
Capsella rubella scaffold_2 5 CH_cru_358 4 9 0.00000866176
Capsella rubella scaffold_6 5 CH_cru_425 3 3 0.0000572563
Capsella rubella scaffold_2 5 CH_cru_5 17 23 3.14268e-42
Daucus carota DCARv2_Chr7 5 CH_dca_628 2 2 0.000382665
Davidia involucrata GWHABJS00000014 5 CH_din_474 2 2 0.0000500125
Eutrema salsugineum scaffold_14 5 CH_esa_14 9 18 1.55883e-22
Fragaria vesca Fvb2 5 CH_fve_728 2 2 0.000353461
Helianthus annuus HanXRQChr11 5 CH_han_1010 2 2 0.000231857
Lactuca sativa Lsat_1_v8_lg_2 5 CH_lsa_340 3 3 0.0000000792629
Malus domestica Chr09 5 CH_mdo_1199 2 3 0.00034128
Olea europaea scaffold1019 5 CH_oeu_487 2 2 0.000160137
Oryza sativa ssp. japonica chr01 5 CH_osa_265 3 7 0.000000146418
Petunia axillaris Peaxi162Scf00104 5 CH_pax_472 2 2 0.0000703556
Prunus persica Pp03 5 CH_ppe_782 2 2 0.000447577
Prunus persica Pp08 5 CH_ppe_783 2 2 0.000447577
Pisum sativum chr2LG1 5 CH_psa_123 4 10 0.000000000447015
Populus trichocarpa Chr04 5 CH_ptr_759 2 2 0.000578001
Rhododendron simsii chr08 5 CH_rsi_164 5 8 0.000000000000152935
Sechium edule LG05 5 CH_sed_67 4 4 0.0000000000163416
Solanum lycopersicum SL4.0ch03 5 CH_sly_215 4 7 0.00000000267417
Solanum lycopersicum SL4.0ch00 5 CH_sly_544 3 9 0.0000364276
Schrenkiella parvula ch7-1 5 CH_spa_46 5 13 0.000000000046684
Solanum pennellii Spenn-ch03 5 CH_spe_160 4 16 0.000000000480366
Solanum tuberosum ST4.03ch03 5 CH_stu_154 4 5 0.00000000000201871
Tarenaya hassleriana NW_010960187.1 5 CH_tha_268 2 2 0.000209541
Trifolium pratense Tp57577_TGAC_v2_LG2 5 CH_tpr_17 7 8 9.39093e-20
Tripterygium wilfordii NC_052240.1 5 CH_twi_414 2 2 0.000167252
Vaccinium macrocarpon chr12_Vaccinium_macrocarpon_Stevens_v1 5 CH_vma_251 3 4 0.000000518054
Vitis vinifera chr14 5 CH_vvi_578 2 3 0.00022818
Acer truncatum chr1 6 CH_acertr_196 3 3 0.000000007455
Actinidia chinensis Lachesis_group21 6 CH_ach_477 2 2 0.000325928
Arabidopsis lyrata scaffold_2 6 CH_aly_174 4 5 0.0000000102628
Arabidopsis lyrata scaffold_7 6 CH_aly_73 6 11 0.000000000000160941
Arabidopsis lyrata scaffold_7 6 CH_aly_81 5 5 0.000000000000881028
Avicennia marina ScioBoG_102836_HRSCAF_103072 6 CH_ama_176 2 2 0.000258665
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.14 6 CH_arhy_1113 2 2 0.000299383
Arabidopsis thaliana Chr5 6 CH_ath_124 5 40 0.00000000041803
Brassica carinata ChrC08 6 CH_bca_1039 3 3 0.0000090779
Brassica carinata ChrB03 6 CH_bca_1385 3 5 0.0000907174
Brassica carinata ChrB03 6 CH_bca_507 4 6 0.0000000596305
Brassica napus A04 6 CH_bna_853 3 5 0.0000169244
Brassica oleracea C6 6 CH_bol_444 3 5 0.0000108936
Brassica oleracea C4 6 CH_bol_84 5 8 0.00000000000296526
Beta vulgaris Chr2_EL10_PGA_scaffold6 6 CH_bvu_368 2 2 0.0000827917
Camellia sinensis var. sinensis Chr1 6 CH_camsi_400 3 3 0.0000000126162
Capsicum annuum PGAv.1.6.scaffold11 6 CH_can_763 2 4 0.000495622
Corylus avellana 5 6 CH_cav_548 2 2 0.0000766695
Citrus clementina scaffold_6 6 CH_ccl_62 6 6 8.3609e-20
Cardamine hirsuta Chr7 6 CH_chi_25 10 18 7.20751e-24
Cardamine hirsuta Chr2 6 CH_chi_31 9 12 8.07922e-23
Carica papaya supercontig_116 6 CH_cpa_401 2 2 0.0000950661
Capsella rubella scaffold_7 6 CH_cru_113 6 10 0.0000000000191625
Capsella rubella scaffold_2 6 CH_cru_358 4 9 0.00000866176
Capsella rubella scaffold_6 6 CH_cru_425 3 3 0.0000572563
Capsella rubella scaffold_2 6 CH_cru_5 17 23 3.14268e-42
Daucus carota DCARv2_Chr7 6 CH_dca_628 2 2 0.000382665
Davidia involucrata GWHABJS00000014 6 CH_din_474 2 2 0.0000500125
Eutrema salsugineum scaffold_14 6 CH_esa_14 9 18 1.55883e-22
Fragaria vesca Fvb2 6 CH_fve_728 2 2 0.000353461
Helianthus annuus HanXRQChr11 6 CH_han_1010 2 2 0.000231857
Lactuca sativa Lsat_1_v8_lg_2 6 CH_lsa_340 3 3 0.0000000792629
Malus domestica Chr09 6 CH_mdo_1199 2 3 0.00034128
Olea europaea scaffold1019 6 CH_oeu_487 2 2 0.000160137
Oryza sativa ssp. japonica chr01 6 CH_osa_265 3 7 0.000000146418
Petunia axillaris Peaxi162Scf00104 6 CH_pax_472 2 2 0.0000703556
Prunus persica Pp03 6 CH_ppe_782 2 2 0.000447577
Prunus persica Pp08 6 CH_ppe_783 2 2 0.000447577
Pisum sativum chr2LG1 6 CH_psa_123 4 10 0.000000000447015
Populus trichocarpa Chr04 6 CH_ptr_759 2 2 0.000578001
Rhododendron simsii chr08 6 CH_rsi_164 5 8 0.000000000000152935
Sechium edule LG05 6 CH_sed_67 4 4 0.0000000000163416
Solanum lycopersicum SL4.0ch03 6 CH_sly_215 4 7 0.00000000267417
Solanum lycopersicum SL4.0ch00 6 CH_sly_544 3 9 0.0000364276
Schrenkiella parvula ch7-1 6 CH_spa_46 5 13 0.000000000046684
Solanum pennellii Spenn-ch03 6 CH_spe_160 4 16 0.000000000480366
Solanum tuberosum ST4.03ch03 6 CH_stu_154 4 5 0.00000000000201871
Tarenaya hassleriana NW_010960187.1 6 CH_tha_268 2 2 0.000209541
Trifolium pratense Tp57577_TGAC_v2_LG2 6 CH_tpr_17 7 8 9.39093e-20
Tripterygium wilfordii NC_052240.1 6 CH_twi_414 2 2 0.000167252
Vaccinium macrocarpon chr12_Vaccinium_macrocarpon_Stevens_v1 6 CH_vma_251 3 4 0.000000518054
Vitis vinifera chr14 6 CH_vvi_578 2 3 0.00022818

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001