Functional clusters

Information

  • Type InterPro
  • Description E3 ubiquitin-protein ligase RFI2

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Arabidopsis lyrata scaffold_9 5 CH_aly_693 2 2 0.000660044
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.16 5 CH_arhy_1182 2 2 0.000449075
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.06 5 CH_arhy_1183 2 2 0.000449075
Ceratophyllum demersum 1 5 CH_cde_536 2 2 0.000789796
Ceratophyllum demersum 1 5 CH_cde_537 2 2 0.000789796
Daucus carota DCARv2_Chr6 5 CH_dca_626 2 2 0.000382665
Helianthus annuus HanXRQChr09 5 CH_han_561 3 7 0.00000156757
Lonicera japonica GWHAAZE00000005 5 CH_lonja_142 7 28 1.54659e-16
Magnolia biondii Chr11 5 CH_mbi_1275 2 3 0.00087414
Olea europaea chr5 5 CH_oeu_565 2 2 0.000320273
Salix brachista GWHAAZH00000013 5 CH_sbr_638 3 55 0.000623266
Solanum lycopersicum SL4.0ch05 5 CH_sly_746 2 2 0.000176082
Solanum tuberosum ST4.03ch05 5 CH_stu_876 2 2 0.000512453
Theobroma cacao Chromosome_4 5 CH_tca_697 2 2 0.000439432
Vaccinium macrocarpon chr5_Vaccinium_macrocarpon_Stevens_v1 5 CH_vma_729 2 2 0.000557543
Vanilla planifolia CM028163.1 5 CH_vpl_515 2 3 0.000221656
Arabidopsis lyrata scaffold_9 6 CH_aly_693 2 2 0.000660044
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.16 6 CH_arhy_1182 2 2 0.000449075
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.06 6 CH_arhy_1183 2 2 0.000449075
Ceratophyllum demersum 1 6 CH_cde_536 2 2 0.000789796
Ceratophyllum demersum 1 6 CH_cde_537 2 2 0.000789796
Daucus carota DCARv2_Chr6 6 CH_dca_626 2 2 0.000382665
Helianthus annuus HanXRQChr09 6 CH_han_561 3 7 0.00000156757
Lonicera japonica GWHAAZE00000005 6 CH_lonja_142 7 28 1.54659e-16
Magnolia biondii Chr11 6 CH_mbi_1275 2 3 0.00087414
Olea europaea chr5 6 CH_oeu_565 2 2 0.000320273
Salix brachista GWHAAZH00000013 6 CH_sbr_638 3 55 0.000623266
Solanum lycopersicum SL4.0ch05 6 CH_sly_746 2 2 0.000176082
Solanum tuberosum ST4.03ch05 6 CH_stu_876 2 2 0.000512453
Theobroma cacao Chromosome_4 6 CH_tca_697 2 2 0.000439432
Vaccinium macrocarpon chr5_Vaccinium_macrocarpon_Stevens_v1 6 CH_vma_729 2 2 0.000557543
Vanilla planifolia CM028163.1 6 CH_vpl_515 2 3 0.000221656

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001