Functional clusters
Information
- Type InterPro
- Description Calcium-binding protein KIC/PBP1/KRP1
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Camellia sinensis var. sinensis | Chr7 | 5 | CH_camsi_413 | 5 | 24 | 0.0000000163003 |
| Cannabis sativa | NC_044371.1 | 5 | CH_cansat_586 | 2 | 2 | 0.000656642 |
| Citrus clementina | scaffold_1 | 5 | CH_ccl_434 | 4 | 46 | 0.000009404 |
| Carpinus fangiana | Cfa06 | 5 | CH_cfa_564 | 2 | 2 | 0.000454408 |
| Helianthus annuus | HanXRQChr15 | 5 | CH_han_245 | 5 | 16 | 0.0000000000938733 |
| Malus domestica | Chr05 | 5 | CH_mdo_637 | 3 | 4 | 0.00000246728 |
| Medicago truncatula | chr2 | 5 | CH_mtr_528 | 4 | 17 | 0.0000000623171 |
| Nelumbo nucifera | chr1 | 5 | CH_nnu_198 | 5 | 42 | 0.0000001023 |
| Nelumbo nucifera | chr1 | 5 | CH_nnu_32 | 6 | 7 | 2.04413e-16 |
| Nicotiana tabacum | Nitab4.5_0000207 | 5 | CH_nta_133 | 3 | 5 | 0.00000361094 |
| Prunus persica | Pp04 | 5 | CH_ppe_366 | 3 | 3 | 0.000000292152 |
| Pisum sativum | chr5LG3 | 5 | CH_psa_748 | 2 | 2 | 0.000782452 |
| Rosa chinensis | RcHm_v2.0_Chr5 | 5 | CH_rch_1409 | 2 | 2 | 0.000597979 |
| Salix brachista | GWHAAZH00000016 | 5 | CH_sbr_680 | 4 | 70 | 0.000676226 |
| Sequoiadendron giganteum | chr5 | 5 | CH_sgi_2196 | 3 | 35 | 0.000232537 |
| Solanum lycopersicum | SL4.0ch10 | 5 | CH_sly_525 | 3 | 8 | 0.000024289 |
| Solanum pennellii | Spenn-ch10 | 5 | CH_spe_447 | 3 | 7 | 0.0000087206 |
| Solanum tuberosum | ST4.03ch10 | 5 | CH_stu_455 | 3 | 5 | 0.00000330801 |
| Trifolium pratense | Tp57577_TGAC_v2_scaf_119 | 5 | CH_tpr_378 | 3 | 7 | 0.0000105231 |
| Vitis vinifera | chr2 | 5 | CH_vvi_628 | 2 | 2 | 0.000228189 |
| Camellia sinensis var. sinensis | Chr7 | 6 | CH_camsi_413 | 5 | 24 | 0.0000000163003 |
| Cannabis sativa | NC_044371.1 | 6 | CH_cansat_586 | 2 | 2 | 0.000656642 |
| Citrus clementina | scaffold_1 | 6 | CH_ccl_434 | 4 | 46 | 0.000009404 |
| Carpinus fangiana | Cfa06 | 6 | CH_cfa_564 | 2 | 2 | 0.000454408 |
| Helianthus annuus | HanXRQChr15 | 6 | CH_han_245 | 5 | 16 | 0.0000000000938733 |
| Malus domestica | Chr05 | 6 | CH_mdo_637 | 3 | 4 | 0.00000246728 |
| Medicago truncatula | chr2 | 6 | CH_mtr_528 | 4 | 17 | 0.0000000623171 |
| Nelumbo nucifera | chr1 | 6 | CH_nnu_198 | 5 | 42 | 0.0000001023 |
| Nelumbo nucifera | chr1 | 6 | CH_nnu_32 | 6 | 7 | 2.04413e-16 |
| Nicotiana tabacum | Nitab4.5_0000207 | 6 | CH_nta_133 | 3 | 5 | 0.00000361094 |
| Prunus persica | Pp04 | 6 | CH_ppe_366 | 3 | 3 | 0.000000292152 |
| Pisum sativum | chr5LG3 | 6 | CH_psa_748 | 2 | 2 | 0.000782452 |
| Rosa chinensis | RcHm_v2.0_Chr5 | 6 | CH_rch_1409 | 2 | 2 | 0.000597979 |
| Salix brachista | GWHAAZH00000016 | 6 | CH_sbr_680 | 4 | 70 | 0.000676226 |
| Sequoiadendron giganteum | chr5 | 6 | CH_sgi_2196 | 3 | 35 | 0.000232537 |
| Solanum lycopersicum | SL4.0ch10 | 6 | CH_sly_525 | 3 | 8 | 0.000024289 |
| Solanum pennellii | Spenn-ch10 | 6 | CH_spe_447 | 3 | 7 | 0.0000087206 |
| Solanum tuberosum | ST4.03ch10 | 6 | CH_stu_455 | 3 | 5 | 0.00000330801 |
| Trifolium pratense | Tp57577_TGAC_v2_scaf_119 | 6 | CH_tpr_378 | 3 | 7 | 0.0000105231 |
| Vitis vinifera | chr2 | 6 | CH_vvi_628 | 2 | 2 | 0.000228189 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |