Functional clusters

Information

  • Type InterPro
  • Description Apoptotic protease-activating factors, helical domain

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Aethionema arabicum LG-1 5 CH_aar_61 9 18 0.000000000000226907
Acer truncatum chr1 5 CH_acertr_934 7 80 0.000523156
Actinidia chinensis Lachesis_group3 5 CH_ach_149 8 75 0.000000601836
Actinidia chinensis Lachesis_group0 5 CH_ach_41 6 7 0.0000000000530269
Actinidia chinensis Lachesis_group20 5 CH_ach_563 3 3 0.000555857
Amaranthus hybridus AmaHy_arrow1_Scaffold_12 5 CH_amhyb_141 5 7 0.00000149503
Amaranthus hybridus AmaHy_arrow1_Scaffold_13 5 CH_amhyb_182 4 4 0.0000146998
Arabidopsis thaliana Chr1 5 CH_ath_653 4 13 0.000902756
Amborella trichopoda AmTr_v1.0_scaffold00061 5 CH_atr_333 4 6 0.0000244486
Brassica napus C08 5 CH_bna_1131 5 14 0.000173694
Brassica napus A09 5 CH_bna_1198 4 6 0.000252568
Brassica napus C02 5 CH_bna_742 8 60 0.00000555516
Brassica oleracea C2 5 CH_bol_581 6 34 0.0000861909
Beta vulgaris Chr3_EL10_PGA_scaffold7 5 CH_bvu_220 5 6 0.000000602711
Cannabis sativa NC_044377.1 5 CH_cansat_136 11 55 0.00000000133691
Capsicum annuum PGAv.1.6.scaffold656 5 CH_can_820 5 7 0.000663907
Corylus avellana 3 5 CH_cav_19 17 35 5.47347e-30
Corylus avellana 2 5 CH_cav_318 4 4 0.00000236507
Corylus avellana 6 5 CH_cav_319 4 4 0.00000236507
Citrus clementina scaffold_5 5 CH_ccl_285 10 27 0.0000000658174
Citrus clementina scaffold_3 5 CH_ccl_384 6 7 0.00000159321
Carpinus fangiana Cfa08 5 CH_cfa_32 10 13 1.08386e-21
Carpinus fangiana Cfa02 5 CH_cfa_450 3 3 0.000148814
Carya illinoinensis Chr16 5 CH_cil_272 9 24 0.00000000952992
Carya illinoinensis Chr16 5 CH_cil_612 6 16 0.0000992667
Chenopodium quinoa C_Quinoa_Scaffold_1257 5 CH_cqu_511 8 46 0.00000590744
Capsella rubella scaffold_2 5 CH_cru_219 7 15 0.0000000511703
Capsella rubella scaffold_2 5 CH_cru_383 6 17 0.0000162686
Capsella rubella scaffold_7 5 CH_cru_408 4 4 0.0000384597
Capsella rubella scaffold_5 5 CH_cru_71 9 10 0.00000000000000287638
Cucumis sativus L. chr3 5 CH_csa_377 3 3 0.000231007
Daucus carota DCARv2_Chr1 5 CH_dca_379 4 5 0.0000388297
Daucus carota DCARv2_Chr3 5 CH_dca_91 11 58 0.000000000017147
Davidia involucrata GWHABJS00000010 5 CH_din_486 8 68 0.0000689067
Davidia involucrata GWHABJS00000015 5 CH_din_717 5 16 0.000460673
Durio zibethinus NW_019167871.1 5 CH_dzi_292 7 20 0.00000379488
Durio zibethinus NW_019168004.1 5 CH_dzi_591 7 40 0.000802364
Erigeron canadensis Conyza_canadensis_scaffold:7 5 CH_eca_185 12 77 0.0000000032519
Erigeron canadensis Conyza_canadensis_scaffold:6 5 CH_eca_579 9 79 0.0000809916
Erigeron canadensis Conyza_canadensis_scaffold:9 5 CH_eca_703 7 41 0.000291497
Eucalyptus grandis Chr06 5 CH_egr_1233 6 10 0.000255922
Eucalyptus grandis Chr02 5 CH_egr_1426 7 19 0.000983485
Eucalyptus grandis Chr07 5 CH_egr_151 26 80 4.81172e-21
Eucalyptus grandis Chr03 5 CH_egr_272 16 32 0.00000000000000224661
Eucalyptus grandis Chr05 5 CH_egr_504 13 33 0.00000000034393
Erythranthe guttata scaffold_4 5 CH_egut_161 15 80 0.0000000000873037
Erythranthe guttata scaffold_9 5 CH_egut_77 13 22 1.16453e-16
Fragaria vesca Fvb2 5 CH_fve_390 6 9 0.000000946667
Gossypium hirsutum A01 5 CH_ghi_104 13 18 2.78305e-19
Gossypium hirsutum D10 5 CH_ghi_218 10 17 0.00000000000130737
Gossypium hirsutum D13 5 CH_ghi_265 8 10 0.0000000000509644
Gossypium hirsutum A04 5 CH_ghi_647 10 60 0.00000372805
Gossypium hirsutum A03 5 CH_ghi_723 5 6 0.0000140045
Glycine max Gm03 5 CH_gma_137 11 35 0.0000000000123091
Gossypium raimondii Chr09 5 CH_gra_108 14 59 0.0000000000000727311
Helianthus annuus HanXRQChr14 5 CH_han_1030 4 5 0.000304581
Helianthus annuus HanXRQChr11 5 CH_han_741 5 8 0.000019645
Helianthus annuus HanXRQChr06 5 CH_han_964 8 64 0.000228023
Hydrangea macrophylla Hma1.2p1_0160F.1 5 CH_hma_607 4 7 0.000363586
Lotus japonicus chr6 5 CH_lja_177 8 24 0.0000001063
Lonicera japonica GWHAAZE00000005 5 CH_lonja_1111 5 14 0.000492592
Lonicera japonica GWHAAZE00000005 5 CH_lonja_281 9 22 0.000000000140466
Lonicera japonica GWHAAZE00000021 5 CH_lonja_445 8 28 0.000000145727
Lactuca sativa Lsat_1_v8_lg_2 5 CH_lsa_321 9 26 0.0000000398819
Lactuca sativa Lsat_1_v8_lg_2 5 CH_lsa_477 9 41 0.00000396584
Lactuca sativa Lsat_1_v8_lg_5 5 CH_lsa_838 5 10 0.000564214
Magnolia biondii Chr11 5 CH_mbi_704 9 80 0.0000341607
Manihot esculenta Chromosome11 5 CH_mes_550 9 71 0.000167029
Manihot esculenta Chromosome07 5 CH_mes_57 17 35 1.42047e-22
Manihot esculenta Chromosome02 5 CH_mes_68 19 66 2.4053e-20
Manihot esculenta Chromosome11 5 CH_mes_702 4 5 0.000621759
Nelumbo nucifera chr5 5 CH_nnu_359 7 54 0.000038569
Olea europaea chr18 5 CH_oeu_108 6 8 0.0000000138946
Olea europaea chr17 5 CH_oeu_133 5 5 0.00000010414
Olea europaea chr16 5 CH_oeu_376 5 12 0.0000801805
Olea europaea scaffold629 5 CH_oeu_377 5 12 0.0000801805
Oryza sativa ssp. japonica chr09 5 CH_osa_555 4 5 0.00015113
Oryza sativa ssp. japonica chr01 5 CH_osa_687 4 6 0.000451472
Petunia axillaris Peaxi162Scf00264 5 CH_pax_480 4 7 0.0000771151
Prunus persica Pp01 5 CH_ppe_170 14 45 0.00000000000520849
Pisum sativum chr5LG3 5 CH_psa_480 6 71 0.0000575195
Pisum sativum chr5LG3 5 CH_psa_583 4 14 0.000205397
Papaver somniferum NC_039358.1 5 CH_pso_649 4 4 0.00000331809
Papaver somniferum NC_039364.1 5 CH_pso_851 4 6 0.0000495757
Populus trichocarpa Chr01 5 CH_ptr_137 8 8 0.00000000000169611
Phaseolus vulgaris Chr08 5 CH_pvu_231 8 16 0.0000000734169
Quercus lobata 7 5 CH_qlo_1172 9 23 0.0000300836
Quercus lobata Scq3eQI_1902 5 CH_qlo_1544 7 14 0.000301001
Rosa chinensis RcHm_v2.0_Chr3 5 CH_rch_650 10 37 0.000000417299
Rhododendron simsii chr04 5 CH_rsi_221 9 25 0.0000000000168817
Rhododendron simsii chr11 5 CH_rsi_56 14 24 1.32616e-23
Rhododendron simsii chr06 5 CH_rsi_733 4 6 0.000132276
Rhododendron simsii chr11 5 CH_rsi_942 4 8 0.000613272
Striga asiatica scaffold71 5 CH_sas_83 7 69 0.00000443562
Salvia bowleyana GWHASIU00000002 5 CH_sbo_152 13 31 0.00000000000187242
Salvia bowleyana GWHASIU00000007 5 CH_sbo_233 14 62 0.00000000234045
Salvia bowleyana GWHASIU00000001 5 CH_sbo_670 6 13 0.000323251
Salvia bowleyana GWHASIU00000001 5 CH_sbo_95 19 64 2.30475e-16
Salix brachista GWHAAZH00000014 5 CH_sbr_185 9 52 0.00000000377991
Salix brachista GWHAAZH00000013 5 CH_sbr_23 18 60 1.52518e-26
Simmondsia chinensis GWHAASQ00000019 5 CH_sci_248 4 8 0.0000472684
Sequoiadendron giganteum chr3 5 CH_sgi_2176 5 6 0.000185012
Selaginella moellendorffii scaffold_40 5 CH_smo_92 4 9 0.000000219613
Solanum pennellii Spenn-ch04 5 CH_spe_318 5 6 0.00000027642
Solanum tuberosum ST4.03ch12 5 CH_stu_411 6 9 0.00000110018
Selenicereus undatus Scaffold_19641 5 CH_sun_228 3 4 0.000142294
Theobroma cacao Chromosome_5 5 CH_tca_191 10 24 0.000000000244957
Theobroma cacao Chromosome_5 5 CH_tca_404 11 74 0.00000316223
Tripterygium wilfordii NC_052254.1 5 CH_twi_40 9 20 0.0000000000000452576
Vigna mungo CM024079.1 5 CH_vmu_268 8 41 0.0000148681
Vigna mungo CM024070.1 5 CH_vmu_86 9 20 0.000000000207002
Vitis vinifera chr9 5 CH_vvi_463 5 7 0.0000359165
Aethionema arabicum LG-1 6 CH_aar_61 9 18 0.000000000000226907
Acer truncatum chr1 6 CH_acertr_934 7 80 0.000523156
Actinidia chinensis Lachesis_group3 6 CH_ach_149 8 75 0.000000601836
Actinidia chinensis Lachesis_group0 6 CH_ach_41 6 7 0.0000000000530269
Actinidia chinensis Lachesis_group20 6 CH_ach_563 3 3 0.000555857
Amaranthus hybridus AmaHy_arrow1_Scaffold_12 6 CH_amhyb_141 5 7 0.00000149503
Amaranthus hybridus AmaHy_arrow1_Scaffold_13 6 CH_amhyb_182 4 4 0.0000146998
Arabidopsis thaliana Chr1 6 CH_ath_653 4 13 0.000902756
Amborella trichopoda AmTr_v1.0_scaffold00061 6 CH_atr_333 4 6 0.0000244486
Brassica napus C08 6 CH_bna_1131 5 14 0.000173694
Brassica napus A09 6 CH_bna_1198 4 6 0.000252568
Brassica napus C02 6 CH_bna_742 8 60 0.00000555516
Brassica oleracea C2 6 CH_bol_581 6 34 0.0000861909
Beta vulgaris Chr3_EL10_PGA_scaffold7 6 CH_bvu_220 5 6 0.000000602711
Cannabis sativa NC_044377.1 6 CH_cansat_136 11 55 0.00000000133691
Capsicum annuum PGAv.1.6.scaffold656 6 CH_can_820 5 7 0.000663907
Corylus avellana 3 6 CH_cav_19 17 35 5.47347e-30
Corylus avellana 2 6 CH_cav_318 4 4 0.00000236507
Corylus avellana 6 6 CH_cav_319 4 4 0.00000236507
Citrus clementina scaffold_5 6 CH_ccl_285 10 27 0.0000000658174
Citrus clementina scaffold_3 6 CH_ccl_384 6 7 0.00000159321
Carpinus fangiana Cfa08 6 CH_cfa_32 10 13 1.08386e-21
Carpinus fangiana Cfa02 6 CH_cfa_450 3 3 0.000148814
Carya illinoinensis Chr16 6 CH_cil_272 9 24 0.00000000952992
Carya illinoinensis Chr16 6 CH_cil_612 6 16 0.0000992667
Cucumis melo chr04 6 CH_cme_474 3 4 0.000739205
Cucumis melo chr05 6 CH_cme_8 17 46 1.38599e-31
Chenopodium quinoa C_Quinoa_Scaffold_1257 6 CH_cqu_511 8 46 0.00000590744
Capsella rubella scaffold_2 6 CH_cru_219 7 15 0.0000000511703
Capsella rubella scaffold_2 6 CH_cru_383 6 17 0.0000162686
Capsella rubella scaffold_7 6 CH_cru_408 4 4 0.0000384597
Capsella rubella scaffold_5 6 CH_cru_71 9 10 0.00000000000000287638
Cucumis sativus L. chr3 6 CH_csa_377 3 3 0.000231007
Daucus carota DCARv2_Chr1 6 CH_dca_379 4 5 0.0000388297
Daucus carota DCARv2_Chr3 6 CH_dca_91 11 58 0.000000000017147
Davidia involucrata GWHABJS00000010 6 CH_din_486 8 68 0.0000689067
Davidia involucrata GWHABJS00000015 6 CH_din_717 5 16 0.000460673
Durio zibethinus NW_019167871.1 6 CH_dzi_292 7 20 0.00000379488
Durio zibethinus NW_019168004.1 6 CH_dzi_591 7 40 0.000802364
Erigeron canadensis Conyza_canadensis_scaffold:7 6 CH_eca_185 12 77 0.0000000032519
Erigeron canadensis Conyza_canadensis_scaffold:6 6 CH_eca_579 9 79 0.0000809916
Erigeron canadensis Conyza_canadensis_scaffold:9 6 CH_eca_703 7 41 0.000291497
Eucalyptus grandis Chr06 6 CH_egr_1233 6 10 0.000255922
Eucalyptus grandis Chr02 6 CH_egr_1426 7 19 0.000983485
Eucalyptus grandis Chr07 6 CH_egr_151 26 80 4.81172e-21
Eucalyptus grandis Chr03 6 CH_egr_272 16 32 0.00000000000000224661
Eucalyptus grandis Chr05 6 CH_egr_504 13 33 0.00000000034393
Erythranthe guttata scaffold_4 6 CH_egut_161 15 80 0.0000000000873037
Erythranthe guttata scaffold_9 6 CH_egut_77 13 22 1.16453e-16
Fragaria vesca Fvb2 6 CH_fve_390 6 9 0.000000946667
Gossypium hirsutum A01 6 CH_ghi_104 13 18 2.78305e-19
Gossypium hirsutum D10 6 CH_ghi_218 10 17 0.00000000000130737
Gossypium hirsutum D13 6 CH_ghi_265 8 10 0.0000000000509644
Gossypium hirsutum A04 6 CH_ghi_647 10 60 0.00000372805
Gossypium hirsutum A03 6 CH_ghi_723 5 6 0.0000140045
Glycine max Gm03 6 CH_gma_137 11 35 0.0000000000123091
Gossypium raimondii Chr09 6 CH_gra_108 14 59 0.0000000000000727311
Helianthus annuus HanXRQChr14 6 CH_han_1030 4 5 0.000304581
Helianthus annuus HanXRQChr11 6 CH_han_741 5 8 0.000019645
Helianthus annuus HanXRQChr06 6 CH_han_964 8 64 0.000228023
Hydrangea macrophylla Hma1.2p1_0160F.1 6 CH_hma_607 4 7 0.000363586
Lotus japonicus chr6 6 CH_lja_177 8 24 0.0000001063
Lonicera japonica GWHAAZE00000005 6 CH_lonja_1111 5 14 0.000492592
Lonicera japonica GWHAAZE00000005 6 CH_lonja_281 9 22 0.000000000140466
Lonicera japonica GWHAAZE00000021 6 CH_lonja_445 8 28 0.000000145727
Lactuca sativa Lsat_1_v8_lg_2 6 CH_lsa_321 9 26 0.0000000398819
Lactuca sativa Lsat_1_v8_lg_2 6 CH_lsa_477 9 41 0.00000396584
Lactuca sativa Lsat_1_v8_lg_5 6 CH_lsa_838 5 10 0.000564214
Magnolia biondii Chr11 6 CH_mbi_704 9 80 0.0000341607
Manihot esculenta Chromosome11 6 CH_mes_550 9 71 0.000167029
Manihot esculenta Chromosome07 6 CH_mes_57 17 35 1.42047e-22
Manihot esculenta Chromosome02 6 CH_mes_68 19 66 2.4053e-20
Manihot esculenta Chromosome11 6 CH_mes_702 4 5 0.000621759
Nelumbo nucifera chr5 6 CH_nnu_359 7 54 0.000038569
Olea europaea chr18 6 CH_oeu_108 6 8 0.0000000138946
Olea europaea chr17 6 CH_oeu_133 5 5 0.00000010414
Olea europaea chr16 6 CH_oeu_376 5 12 0.0000801805
Olea europaea scaffold629 6 CH_oeu_377 5 12 0.0000801805
Oryza sativa ssp. japonica chr09 6 CH_osa_555 4 5 0.00015113
Oryza sativa ssp. japonica chr01 6 CH_osa_687 4 6 0.000451472
Petunia axillaris Peaxi162Scf00264 6 CH_pax_480 4 7 0.0000771151
Prunus persica Pp01 6 CH_ppe_170 14 45 0.00000000000520849
Pisum sativum chr5LG3 6 CH_psa_480 6 71 0.0000575195
Pisum sativum chr5LG3 6 CH_psa_583 4 14 0.000205397
Papaver somniferum NC_039358.1 6 CH_pso_649 4 4 0.00000331809
Papaver somniferum NC_039364.1 6 CH_pso_851 4 6 0.0000495757
Populus trichocarpa Chr01 6 CH_ptr_137 8 8 0.00000000000169611
Phaseolus vulgaris Chr08 6 CH_pvu_231 8 16 0.0000000734169
Quercus lobata 7 6 CH_qlo_1172 9 23 0.0000300836
Quercus lobata Scq3eQI_1902 6 CH_qlo_1544 7 14 0.000301001
Rosa chinensis RcHm_v2.0_Chr3 6 CH_rch_650 10 37 0.000000417299
Rhododendron simsii chr04 6 CH_rsi_221 9 25 0.0000000000168817
Rhododendron simsii chr11 6 CH_rsi_56 14 24 1.32616e-23
Rhododendron simsii chr06 6 CH_rsi_733 4 6 0.000132276
Rhododendron simsii chr11 6 CH_rsi_942 4 8 0.000613272
Striga asiatica scaffold71 6 CH_sas_83 7 69 0.00000443562
Salvia bowleyana GWHASIU00000002 6 CH_sbo_152 13 31 0.00000000000187242
Salvia bowleyana GWHASIU00000007 6 CH_sbo_233 14 62 0.00000000234045
Salvia bowleyana GWHASIU00000001 6 CH_sbo_670 6 13 0.000323251
Salvia bowleyana GWHASIU00000001 6 CH_sbo_95 19 64 2.30475e-16
Salix brachista GWHAAZH00000014 6 CH_sbr_185 9 52 0.00000000377991
Salix brachista GWHAAZH00000013 6 CH_sbr_23 18 60 1.52518e-26
Simmondsia chinensis GWHAASQ00000019 6 CH_sci_248 4 8 0.0000472684
Sequoiadendron giganteum chr3 6 CH_sgi_2176 5 6 0.000185012
Selaginella moellendorffii scaffold_40 6 CH_smo_92 4 9 0.000000219613
Solanum pennellii Spenn-ch04 6 CH_spe_318 5 6 0.00000027642
Solanum tuberosum ST4.03ch12 6 CH_stu_411 6 9 0.00000110018
Selenicereus undatus Scaffold_19641 6 CH_sun_228 3 4 0.000142294
Theobroma cacao Chromosome_5 6 CH_tca_191 10 24 0.000000000244957
Theobroma cacao Chromosome_5 6 CH_tca_404 11 74 0.00000316223
Tripterygium wilfordii NC_052254.1 6 CH_twi_40 9 20 0.0000000000000452576
Vigna mungo CM024079.1 6 CH_vmu_268 8 41 0.0000148681
Vigna mungo CM024070.1 6 CH_vmu_86 9 20 0.000000000207002
Vitis vinifera chr9 6 CH_vvi_463 5 7 0.0000359165

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001