Functional clusters

Information

  • Type InterPro
  • Description Serpin superfamily, domain 2

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Aethionema arabicum LG-3 5 CH_aar_5 16 53 3.66135e-37
Brassica carinata ChrB07 5 CH_bca_294 4 4 0.000000000922079
Brassica carinata ChrC04 5 CH_bca_896 3 3 0.00000308103
Brassica carinata ChrB02 5 CH_bca_897 3 3 0.00000308103
Brassica oleracea C9 5 CH_bol_45 6 10 0.00000000000000327071
Camellia sinensis var. sinensis Chr9 5 CH_camsi_1480 2 4 0.000825322
Capsicum annuum PGAv.1.6.scaffold999 5 CH_can_413 3 3 0.00000372633
Chara braunii BFEA01000019 5 CH_cbr_116 3 7 0.0000027152
Daucus carota DCARv2_Chr1 5 CH_dca_116 5 11 0.000000000665135
Daucus carota DCARv2_Chr5 5 CH_dca_14 7 7 2.67173e-19
Erigeron canadensis Conyza_canadensis_scaffold:2 5 CH_eca_312 3 3 0.000000498357
Eutrema salsugineum scaffold_8 5 CH_esa_242 3 4 0.0000041743
Fragaria vesca Fvb3 5 CH_fve_517 3 4 0.0000320531
Helianthus annuus HanXRQChr13 5 CH_han_36 9 10 7.05999e-25
Malus domestica Chr08 5 CH_mdo_235 5 11 0.000000000145584
Medicago truncatula chr7 5 CH_mtr_639 4 7 0.000000536658
Nelumbo nucifera chr6 5 CH_nnu_391 2 2 0.0000481684
Oryza sativa ssp. japonica chr03 5 CH_osa_346 3 3 0.00000234293
Petunia axillaris Peaxi162Scf00126 5 CH_pax_279 3 3 0.00000212359
Petunia axillaris Peaxi162Scf00357 5 CH_pax_32 6 7 4.65949e-16
Prunus persica Pp01 5 CH_ppe_858 2 2 0.000745962
Papaver somniferum NC_039363.1 5 CH_pso_406 4 4 0.0000000232272
Papaver somniferum NC_039366.1 5 CH_pso_821 3 3 0.0000332565
Papaver somniferum NC_039363.1 5 CH_pso_822 3 3 0.0000332565
Rhododendron simsii chr09 5 CH_rsi_101 8 10 4.05905e-18
Rhododendron simsii chr07 5 CH_rsi_654 3 3 0.0000570869
Simmondsia chinensis GWHAASQ00000002 5 CH_sci_470 2 2 0.000510856
Vaccinium macrocarpon chr12_Vaccinium_macrocarpon_Stevens_v1 5 CH_vma_311 3 3 0.00000370452
Vaccinium macrocarpon chr10_Vaccinium_macrocarpon_Stevens_v1 5 CH_vma_81 5 6 0.00000000000431784
Aethionema arabicum LG-3 6 CH_aar_5 16 53 3.66135e-37
Brassica carinata ChrB07 6 CH_bca_294 4 4 0.000000000922079
Brassica carinata ChrC04 6 CH_bca_896 3 3 0.00000308103
Brassica carinata ChrB02 6 CH_bca_897 3 3 0.00000308103
Brassica oleracea C9 6 CH_bol_45 6 10 0.00000000000000327071
Camellia sinensis var. sinensis Chr9 6 CH_camsi_1480 2 4 0.000825322
Capsicum annuum PGAv.1.6.scaffold999 6 CH_can_413 3 3 0.00000372633
Chara braunii BFEA01000019 6 CH_cbr_116 3 7 0.0000027152
Daucus carota DCARv2_Chr1 6 CH_dca_116 5 11 0.000000000665135
Daucus carota DCARv2_Chr5 6 CH_dca_14 7 7 2.67173e-19
Erigeron canadensis Conyza_canadensis_scaffold:2 6 CH_eca_312 3 3 0.000000498357
Eutrema salsugineum scaffold_8 6 CH_esa_242 3 4 0.0000041743
Fragaria vesca Fvb3 6 CH_fve_517 3 4 0.0000320531
Helianthus annuus HanXRQChr13 6 CH_han_36 9 10 7.05999e-25
Malus domestica Chr08 6 CH_mdo_235 5 11 0.000000000145584
Medicago truncatula chr7 6 CH_mtr_639 4 7 0.000000536658
Nelumbo nucifera chr6 6 CH_nnu_391 2 2 0.0000481684
Oryza sativa ssp. japonica chr03 6 CH_osa_346 3 3 0.00000234293
Petunia axillaris Peaxi162Scf00126 6 CH_pax_279 3 3 0.00000212359
Petunia axillaris Peaxi162Scf00357 6 CH_pax_32 6 7 4.65949e-16
Prunus persica Pp01 6 CH_ppe_858 2 2 0.000745962
Papaver somniferum NC_039363.1 6 CH_pso_406 4 4 0.0000000232272
Papaver somniferum NC_039366.1 6 CH_pso_821 3 3 0.0000332565
Papaver somniferum NC_039363.1 6 CH_pso_822 3 3 0.0000332565
Rhododendron simsii chr09 6 CH_rsi_101 8 10 4.05905e-18
Rhododendron simsii chr07 6 CH_rsi_654 3 3 0.0000570869
Simmondsia chinensis GWHAASQ00000002 6 CH_sci_470 2 2 0.000510856
Vaccinium macrocarpon chr12_Vaccinium_macrocarpon_Stevens_v1 6 CH_vma_311 3 3 0.00000370452
Vaccinium macrocarpon chr10_Vaccinium_macrocarpon_Stevens_v1 6 CH_vma_81 5 6 0.00000000000431784

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001