Functional clusters
Information
- Type InterPro
- Description Serpin superfamily, domain 1
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Anthoceros agrestis | Sc2ySwM_344 | 5 | CH_aag_368 | 2 | 2 | 0.000802568 |
| Arabidopsis lyrata | scaffold_2 | 5 | CH_aly_51 | 6 | 7 | 0.00000000000000158007 |
| Arachis hypogaea | arahy.Tifrunner.gnm1.Arahy.15 | 5 | CH_arhy_561 | 3 | 4 | 0.000000451706 |
| Brassica napus | C09 | 5 | CH_bna_68 | 7 | 13 | 1.77797e-16 |
| Cannabis sativa | NC_044371.1 | 5 | CH_cansat_289 | 3 | 4 | 0.00000310395 |
| Capsicum annuum | PGAv.1.6.scaffold371 | 5 | CH_can_18 | 12 | 23 | 2.39235e-30 |
| Capsella rubella | scaffold_2 | 5 | CH_cru_104 | 5 | 6 | 0.00000000000257438 |
| Daucus carota | DCARv2_Chr1 | 5 | CH_dca_319 | 3 | 3 | 0.00000695578 |
| Fragaria vesca | Fvb5 | 5 | CH_fve_289 | 6 | 48 | 0.0000000258439 |
| Gossypium hirsutum | D06 | 5 | CH_ghi_1186 | 2 | 3 | 0.000480613 |
| Helianthus annuus | HanXRQChr05 | 5 | CH_han_326 | 4 | 4 | 0.00000000303831 |
| Helianthus annuus | HanXRQChr05 | 5 | CH_han_369 | 5 | 18 | 0.0000000115131 |
| Helianthus annuus | HanXRQChr02 | 5 | CH_han_767 | 3 | 4 | 0.0000261978 |
| Oryza sativa ssp. japonica | chr11 | 5 | CH_osa_62 | 9 | 73 | 1.99812e-16 |
| Papaver somniferum | NC_039368.1 | 5 | CH_pso_1272 | 3 | 6 | 0.000868791 |
| Papaver somniferum | NC_039368.1 | 5 | CH_pso_492 | 4 | 5 | 0.000000166567 |
| Papaver somniferum | NC_039362.1 | 5 | CH_pso_97 | 7 | 8 | 1.09508e-16 |
| Anthoceros agrestis | Sc2ySwM_344 | 6 | CH_aag_368 | 2 | 2 | 0.000802568 |
| Arabidopsis lyrata | scaffold_2 | 6 | CH_aly_51 | 6 | 7 | 0.00000000000000158007 |
| Arachis hypogaea | arahy.Tifrunner.gnm1.Arahy.15 | 6 | CH_arhy_561 | 3 | 4 | 0.000000451706 |
| Brassica napus | C09 | 6 | CH_bna_68 | 7 | 13 | 1.77797e-16 |
| Cannabis sativa | NC_044371.1 | 6 | CH_cansat_289 | 3 | 4 | 0.00000310395 |
| Capsicum annuum | PGAv.1.6.scaffold371 | 6 | CH_can_18 | 12 | 23 | 2.39235e-30 |
| Capsella rubella | scaffold_2 | 6 | CH_cru_104 | 5 | 6 | 0.00000000000257438 |
| Daucus carota | DCARv2_Chr1 | 6 | CH_dca_319 | 3 | 3 | 0.00000695578 |
| Fragaria vesca | Fvb5 | 6 | CH_fve_289 | 6 | 48 | 0.0000000258439 |
| Gossypium hirsutum | D06 | 6 | CH_ghi_1186 | 2 | 3 | 0.000480613 |
| Helianthus annuus | HanXRQChr05 | 6 | CH_han_326 | 4 | 4 | 0.00000000303831 |
| Helianthus annuus | HanXRQChr05 | 6 | CH_han_369 | 5 | 18 | 0.0000000115131 |
| Helianthus annuus | HanXRQChr02 | 6 | CH_han_767 | 3 | 4 | 0.0000261978 |
| Oryza sativa ssp. japonica | chr11 | 6 | CH_osa_62 | 9 | 73 | 1.99812e-16 |
| Papaver somniferum | NC_039368.1 | 6 | CH_pso_1272 | 3 | 6 | 0.000868791 |
| Papaver somniferum | NC_039368.1 | 6 | CH_pso_492 | 4 | 5 | 0.000000166567 |
| Papaver somniferum | NC_039362.1 | 6 | CH_pso_97 | 7 | 8 | 1.09508e-16 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |