Functional clusters

Information

  • Type InterPro
  • Description Carbonic anhydrase, prokaryotic-like

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Acer truncatum chr3 5 CH_acertr_459 3 3 0.0000132028
Acer truncatum chr1 5 CH_acertr_460 3 3 0.0000132028
Acer truncatum chr8 5 CH_acertr_75 7 23 0.00000000000057639
Amaranthus hybridus AmaHy_arrow1_Scaffold_8 5 CH_amhyb_301 2 2 0.000252525
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.13 5 CH_arhy_534 3 3 0.000000295785
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.03 5 CH_arhy_678 3 5 0.00000295716
Arabidopsis thaliana Chr4 5 CH_ath_629 2 2 0.000802177
Brassica carinata ChrC05 5 CH_bca_955 3 4 0.00000485479
Camellia sinensis var. sinensis Chr10 5 CH_camsi_43 8 11 1.42569e-22
Cannabis sativa NC_044372.1 5 CH_cansat_300 3 6 0.00000452574
Corylus avellana 10 5 CH_cav_301 3 3 0.00000145491
Corylus avellana 6 5 CH_cav_89 5 6 0.000000000000718364
Coffea canephora chr6 5 CH_ccan_721 2 7 0.000958224
Citrus clementina scaffold_8 5 CH_ccl_766 2 2 0.000820311
Ceratophyllum demersum 5 5 CH_cde_124 3 3 0.00000154391
Carpinus fangiana Cfa07 5 CH_cfa_295 3 4 0.00000192693
Carya illinoinensis Chr13 5 CH_cil_152 5 6 0.00000000000199438
Citrullus lanatus CG_Chr03 5 CH_cla_66 4 6 0.00000000659486
Carica papaya supercontig_182 5 CH_cpa_142 3 3 0.00000013557
Chlamydomonas reinhardtii chromosome_4 5 CH_cre_157 2 2 0.0003412
Cucumis sativus L. chr1 5 CH_csa_84 5 7 0.00000000000353231
Daucus carota DCARv2_Chr3 5 CH_dca_316 3 6 0.00000683064
Erigeron canadensis Conyza_canadensis_scaffold:9 5 CH_eca_742 2 2 0.000448722
Eucalyptus grandis Chr01 5 CH_egr_102 9 14 7.8223e-25
Erythranthe guttata scaffold_10 5 CH_egut_167 4 4 0.000000000145947
Gossypium hirsutum A01 5 CH_ghi_576 3 3 0.00000103632
Helianthus annuus HanXRQChr01 5 CH_han_173 5 6 0.000000000000859647
Helianthus annuus HanXRQChr11 5 CH_han_178 6 19 0.000000000000973946
Helianthus annuus HanXRQChr04 5 CH_han_566 3 3 0.0000018278
Lotus japonicus chr5 5 CH_lja_206 3 3 0.000000268461
Lactuca sativa Lsat_1_v8_lg_1 5 CH_lsa_372 3 3 0.000000221936
Lactuca sativa Lsat_1_v8_lg_1 5 CH_lsa_418 3 4 0.000000887636
Malus domestica Chr12 5 CH_mdo_268 4 5 0.000000000584789
Manihot esculenta Chromosome11 5 CH_mes_222 4 5 0.00000000169034
Marchantia polymorpha scaffold_12 5 CH_mpo_16 7 10 8.63185e-16
Medicago truncatula chr1 5 CH_mtr_616 3 4 0.000000354476
Olea europaea chr4 5 CH_oeu_240 3 8 0.00000837271
Oryza sativa ssp. japonica chr08 5 CH_osa_348 3 4 0.00000276081
Punica granatum NC_045128.1 5 CH_pgr_220 3 3 0.000000168917
Physcomitrium patens Chr07 5 CH_ppa_1 8 10 1.38056e-22
Prunus persica Pp07 5 CH_ppe_141 5 5 0.000000000000107317
Prunus persica Pp04 5 CH_ppe_732 3 13 0.000392878
Pisum sativum chr6LG2 5 CH_psa_133 4 8 0.00000000104296
Phaseolus vulgaris Chr07 5 CH_pvu_496 3 14 0.000164746
Quercus lobata 1 5 CH_qlo_1164 3 5 0.0000271731
Quercus lobata 7 5 CH_qlo_118 8 9 6.74097e-23
Rosa chinensis RcHm_v2.0_Chr3 5 CH_rch_356 5 24 0.000000000202552
Rhododendron simsii chr03 5 CH_rsi_154 5 5 0.0000000000000327802
Sechium edule LG14 5 CH_sed_221 3 3 0.00000218355
Sechium edule LG11 5 CH_sed_98 4 4 0.000000000778948
Sequoiadendron giganteum chr4 5 CH_sgi_2352 4 71 0.000332429
Solanum lycopersicum SL4.0ch06 5 CH_sly_333 3 3 0.000000289388
Solanum pennellii Spenn-ch06 5 CH_spe_840 2 2 0.000667186
Selenicereus undatus Scaffold_19641 5 CH_sun_54 3 3 0.00000000792034
Trochodendron aralioides group2 5 CH_tar_125 4 4 0.000000000214251
Trochodendron aralioides group2 5 CH_tar_333 3 3 0.000000892115
Theobroma cacao Chromosome_5 5 CH_tca_427 3 6 0.00000562982
Vigna mungo CM024071.1 5 CH_vmu_557 3 18 0.000428126
Vitis vinifera chrUn 5 CH_vvi_759 2 2 0.00076063
Acer truncatum chr3 6 CH_acertr_459 3 3 0.0000132028
Acer truncatum chr1 6 CH_acertr_460 3 3 0.0000132028
Acer truncatum chr8 6 CH_acertr_75 7 23 0.00000000000057639
Amaranthus hybridus AmaHy_arrow1_Scaffold_8 6 CH_amhyb_301 2 2 0.000252525
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.13 6 CH_arhy_534 3 3 0.000000295785
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.03 6 CH_arhy_678 3 5 0.00000295716
Arabidopsis thaliana Chr4 6 CH_ath_629 2 2 0.000802177
Brassica carinata ChrC05 6 CH_bca_955 3 4 0.00000485479
Camellia sinensis var. sinensis Chr10 6 CH_camsi_43 8 11 1.42569e-22
Cannabis sativa NC_044372.1 6 CH_cansat_300 3 6 0.00000452574
Corylus avellana 10 6 CH_cav_301 3 3 0.00000145491
Corylus avellana 6 6 CH_cav_89 5 6 0.000000000000718364
Coffea canephora chr6 6 CH_ccan_721 2 7 0.000958224
Citrus clementina scaffold_8 6 CH_ccl_766 2 2 0.000820311
Ceratophyllum demersum 5 6 CH_cde_124 3 3 0.00000154391
Carpinus fangiana Cfa07 6 CH_cfa_295 3 4 0.00000192693
Carya illinoinensis Chr13 6 CH_cil_152 5 6 0.00000000000199438
Citrullus lanatus CG_Chr03 6 CH_cla_66 4 6 0.00000000659486
Cucumis melo chr12 6 CH_cme_101 5 15 0.000000000352559
Cucumis melo chr04 6 CH_cme_102 4 4 0.000000000440925
Carica papaya supercontig_182 6 CH_cpa_142 3 3 0.00000013557
Chlamydomonas reinhardtii chromosome_4 6 CH_cre_157 2 2 0.0003412
Cucumis sativus L. chr1 6 CH_csa_84 5 7 0.00000000000353231
Daucus carota DCARv2_Chr3 6 CH_dca_316 3 6 0.00000683064
Erigeron canadensis Conyza_canadensis_scaffold:9 6 CH_eca_742 2 2 0.000448722
Eucalyptus grandis Chr01 6 CH_egr_102 9 14 7.8223e-25
Erythranthe guttata scaffold_10 6 CH_egut_167 4 4 0.000000000145947
Gossypium hirsutum A01 6 CH_ghi_576 3 3 0.00000103632
Helianthus annuus HanXRQChr01 6 CH_han_173 5 6 0.000000000000859647
Helianthus annuus HanXRQChr11 6 CH_han_178 6 19 0.000000000000973946
Helianthus annuus HanXRQChr04 6 CH_han_566 3 3 0.0000018278
Lotus japonicus chr5 6 CH_lja_206 3 3 0.000000268461
Lactuca sativa Lsat_1_v8_lg_1 6 CH_lsa_372 3 3 0.000000221936
Lactuca sativa Lsat_1_v8_lg_1 6 CH_lsa_418 3 4 0.000000887636
Malus domestica Chr12 6 CH_mdo_268 4 5 0.000000000584789
Manihot esculenta Chromosome11 6 CH_mes_222 4 5 0.00000000169034
Marchantia polymorpha scaffold_12 6 CH_mpo_16 7 10 8.63185e-16
Medicago truncatula chr1 6 CH_mtr_616 3 4 0.000000354476
Olea europaea chr4 6 CH_oeu_240 3 8 0.00000837271
Oryza sativa ssp. japonica chr08 6 CH_osa_348 3 4 0.00000276081
Punica granatum NC_045128.1 6 CH_pgr_220 3 3 0.000000168917
Physcomitrium patens Chr07 6 CH_ppa_1 8 10 1.38056e-22
Prunus persica Pp07 6 CH_ppe_141 5 5 0.000000000000107317
Prunus persica Pp04 6 CH_ppe_732 3 13 0.000392878
Pisum sativum chr6LG2 6 CH_psa_133 4 8 0.00000000104296
Phaseolus vulgaris Chr07 6 CH_pvu_496 3 14 0.000164746
Quercus lobata 1 6 CH_qlo_1164 3 5 0.0000271731
Quercus lobata 7 6 CH_qlo_118 8 9 6.74097e-23
Rosa chinensis RcHm_v2.0_Chr3 6 CH_rch_356 5 24 0.000000000202552
Rhododendron simsii chr03 6 CH_rsi_154 5 5 0.0000000000000327802
Sechium edule LG14 6 CH_sed_221 3 3 0.00000218355
Sechium edule LG11 6 CH_sed_98 4 4 0.000000000778948
Sequoiadendron giganteum chr4 6 CH_sgi_2352 4 71 0.000332429
Solanum lycopersicum SL4.0ch06 6 CH_sly_333 3 3 0.000000289388
Solanum pennellii Spenn-ch06 6 CH_spe_840 2 2 0.000667186
Selenicereus undatus Scaffold_19641 6 CH_sun_54 3 3 0.00000000792034
Trochodendron aralioides group2 6 CH_tar_125 4 4 0.000000000214251
Trochodendron aralioides group2 6 CH_tar_333 3 3 0.000000892115
Theobroma cacao Chromosome_5 6 CH_tca_427 3 6 0.00000562982
Vigna mungo CM024071.1 6 CH_vmu_557 3 18 0.000428126
Vitis vinifera chrUn 6 CH_vvi_759 2 2 0.00076063

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001