Functional clusters
Information
- Type InterPro
- Description Oxidoreductase, N-terminal domain
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Arabidopsis lyrata | scaffold_6 | 5 | CH_aly_120 | 4 | 4 | 0.000000000108706 |
| Arachis hypogaea | arahy.Tifrunner.gnm1.Arahy.02 | 5 | CH_arhy_148 | 6 | 6 | 9.58526e-17 |
| Beta vulgaris | Chr8_EL10_PGA_scaffold4 | 5 | CH_bvu_233 | 3 | 3 | 0.000000863699 |
| Beta vulgaris | Chr3_EL10_PGA_scaffold7 | 5 | CH_bvu_234 | 3 | 3 | 0.000000863699 |
| Citrus clementina | scaffold_3 | 5 | CH_ccl_272 | 4 | 19 | 0.0000000320614 |
| Ceratophyllum demersum | 1 | 5 | CH_cde_533 | 2 | 2 | 0.000789796 |
| Carpinus fangiana | Cfa03 | 5 | CH_cfa_17 | 10 | 11 | 5.12326e-29 |
| Carya illinoinensis | Chr02 | 5 | CH_cil_267 | 4 | 5 | 0.00000000649942 |
| Citrullus lanatus | CG_Chr09 | 5 | CH_cla_68 | 5 | 25 | 0.000000011344 |
| Carica papaya | supercontig_87 | 5 | CH_cpa_631 | 2 | 3 | 0.000855527 |
| Chenopodium quinoa | C_Quinoa_Scaffold_4480 | 5 | CH_cqu_497 | 3 | 4 | 0.00000385185 |
| Capsella rubella | scaffold_6 | 5 | CH_cru_129 | 4 | 4 | 0.0000000000820908 |
| Davidia involucrata | GWHABJS00000014 | 5 | CH_din_311 | 3 | 3 | 0.00000107306 |
| Durio zibethinus | NW_019168048.1 | 5 | CH_dzi_223 | 3 | 3 | 0.000000386688 |
| Durio zibethinus | NW_019168270.1 | 5 | CH_dzi_270 | 3 | 4 | 0.00000154653 |
| Erigeron canadensis | Conyza_canadensis_scaffold:5 | 5 | CH_eca_334 | 3 | 3 | 0.000000863818 |
| Erigeron canadensis | Conyza_canadensis_scaffold:9 | 5 | CH_eca_38 | 6 | 7 | 4.91717e-17 |
| Eucalyptus grandis | Chr08 | 5 | CH_egr_1220 | 3 | 5 | 0.000230671 |
| Eucalyptus grandis | Chr03 | 5 | CH_egr_631 | 4 | 4 | 0.0000000189263 |
| Erythranthe guttata | scaffold_7 | 5 | CH_egut_215 | 6 | 70 | 0.00000000550225 |
| Fragaria vesca | Fvb1 | 5 | CH_fve_27 | 8 | 8 | 4.99412e-24 |
| Gossypium hirsutum | D02 | 5 | CH_ghi_327 | 4 | 6 | 0.000000000857372 |
| Glycine max | Gm03 | 5 | CH_gma_118 | 5 | 12 | 0.00000000000332052 |
| Gossypium raimondii | Chr05 | 5 | CH_gra_342 | 3 | 8 | 0.00000482652 |
| Helianthus annuus | HanXRQChr12 | 5 | CH_han_492 | 4 | 15 | 0.000000321895 |
| Helianthus annuus | HanXRQChr01 | 5 | CH_han_629 | 3 | 4 | 0.00000407592 |
| Lupinus albus | Lalb_Chr12 | 5 | CH_lal_174 | 4 | 12 | 0.000000045029 |
| Lotus japonicus | chr3 | 5 | CH_lja_184 | 4 | 11 | 0.000000119272 |
| Lactuca sativa | Lsat_1_v8_lg_1 | 5 | CH_lsa_135 | 5 | 6 | 0.0000000000013719 |
| Malus domestica | Chr02 | 5 | CH_mdo_55 | 7 | 9 | 2.68254e-19 |
| Malus domestica | Chr15 | 5 | CH_mdo_610 | 3 | 3 | 0.00000176016 |
| Malus domestica | Chr15 | 5 | CH_mdo_611 | 3 | 3 | 0.00000176016 |
| Manihot esculenta | Chromosome05 | 5 | CH_mes_282 | 5 | 45 | 0.000000100078 |
| Manihot esculenta | Chromosome01 | 5 | CH_mes_352 | 3 | 3 | 0.00000123051 |
| Medicago truncatula | chr2 | 5 | CH_mtr_739 | 3 | 4 | 0.00000222796 |
| Oryza sativa ssp. japonica | chr12 | 5 | CH_osa_104 | 5 | 10 | 0.000000000000926 |
| Petunia axillaris | Peaxi162Scf00046 | 5 | CH_pax_308 | 3 | 5 | 0.0000062347 |
| Punica granatum | NC_045128.1 | 5 | CH_pgr_155 | 4 | 4 | 0.00000000173024 |
| Prunus persica | Pp07 | 5 | CH_ppe_159 | 5 | 6 | 0.00000000000110355 |
| Papaver somniferum | NC_039360.1 | 5 | CH_pso_651 | 3 | 6 | 0.00000334914 |
| Phaseolus vulgaris | Chr10 | 5 | CH_pvu_110 | 5 | 12 | 0.00000000000968686 |
| Rhododendron simsii | chr09 | 5 | CH_rsi_66 | 9 | 24 | 3.9795e-22 |
| Striga asiatica | scaffold12 | 5 | CH_sas_69 | 3 | 5 | 0.00000117307 |
| Salvia bowleyana | GWHASIU00000006 | 5 | CH_sbo_313 | 3 | 3 | 0.000000173889 |
| Simmondsia chinensis | GWHAASQ00000019 | 5 | CH_sci_536 | 2 | 2 | 0.000851426 |
| Sequoiadendron giganteum | chr10 | 5 | CH_sgi_1251 | 3 | 3 | 0.000000783163 |
| Trochodendron aralioides | group0 | 5 | CH_tar_260 | 3 | 3 | 0.000000108135 |
| Trochodendron aralioides | group1 | 5 | CH_tar_975 | 2 | 2 | 0.000900549 |
| Theobroma cacao | Chromosome_4 | 5 | CH_tca_140 | 6 | 28 | 0.00000000000373424 |
| Trifolium pratense | Tp57577_TGAC_v2_LG5 | 5 | CH_tpr_448 | 3 | 11 | 0.0000495787 |
| Tripterygium wilfordii | NC_052252.1 | 5 | CH_twi_51 | 5 | 9 | 0.00000000000114992 |
| Vigna mungo | CM024078.1 | 5 | CH_vmu_287 | 3 | 10 | 0.0000262794 |
| Vitis vinifera | chr5 | 5 | CH_vvi_54 | 8 | 14 | 4.18171e-20 |
| Arabidopsis lyrata | scaffold_6 | 6 | CH_aly_120 | 4 | 4 | 0.000000000108706 |
| Arachis hypogaea | arahy.Tifrunner.gnm1.Arahy.02 | 6 | CH_arhy_148 | 6 | 6 | 9.58526e-17 |
| Beta vulgaris | Chr8_EL10_PGA_scaffold4 | 6 | CH_bvu_233 | 3 | 3 | 0.000000863699 |
| Beta vulgaris | Chr3_EL10_PGA_scaffold7 | 6 | CH_bvu_234 | 3 | 3 | 0.000000863699 |
| Citrus clementina | scaffold_3 | 6 | CH_ccl_272 | 4 | 19 | 0.0000000320614 |
| Ceratophyllum demersum | 1 | 6 | CH_cde_533 | 2 | 2 | 0.000789796 |
| Carpinus fangiana | Cfa03 | 6 | CH_cfa_17 | 10 | 11 | 5.12326e-29 |
| Carya illinoinensis | Chr02 | 6 | CH_cil_267 | 4 | 5 | 0.00000000649942 |
| Citrullus lanatus | CG_Chr09 | 6 | CH_cla_68 | 5 | 25 | 0.000000011344 |
| Carica papaya | supercontig_87 | 6 | CH_cpa_631 | 2 | 3 | 0.000855527 |
| Chenopodium quinoa | C_Quinoa_Scaffold_4480 | 6 | CH_cqu_497 | 3 | 4 | 0.00000385185 |
| Capsella rubella | scaffold_6 | 6 | CH_cru_129 | 4 | 4 | 0.0000000000820908 |
| Davidia involucrata | GWHABJS00000014 | 6 | CH_din_311 | 3 | 3 | 0.00000107306 |
| Durio zibethinus | NW_019168048.1 | 6 | CH_dzi_223 | 3 | 3 | 0.000000386688 |
| Durio zibethinus | NW_019168270.1 | 6 | CH_dzi_270 | 3 | 4 | 0.00000154653 |
| Erigeron canadensis | Conyza_canadensis_scaffold:5 | 6 | CH_eca_334 | 3 | 3 | 0.000000863818 |
| Erigeron canadensis | Conyza_canadensis_scaffold:9 | 6 | CH_eca_38 | 6 | 7 | 4.91717e-17 |
| Eucalyptus grandis | Chr08 | 6 | CH_egr_1220 | 3 | 5 | 0.000230671 |
| Eucalyptus grandis | Chr03 | 6 | CH_egr_631 | 4 | 4 | 0.0000000189263 |
| Erythranthe guttata | scaffold_7 | 6 | CH_egut_215 | 6 | 70 | 0.00000000550225 |
| Fragaria x ananassa | Fvb1-2 | 6 | CH_fan_1142 | 3 | 16 | 0.0006601 |
| Fragaria x ananassa | Fvb1-1 | 6 | CH_fan_173 | 4 | 4 | 0.000000000240433 |
| Fragaria vesca | Fvb1 | 6 | CH_fve_27 | 8 | 8 | 4.99412e-24 |
| Gossypium hirsutum | D02 | 6 | CH_ghi_327 | 4 | 6 | 0.000000000857372 |
| Glycine max | Gm03 | 6 | CH_gma_118 | 5 | 12 | 0.00000000000332052 |
| Gossypium raimondii | Chr05 | 6 | CH_gra_342 | 3 | 8 | 0.00000482652 |
| Helianthus annuus | HanXRQChr12 | 6 | CH_han_492 | 4 | 15 | 0.000000321895 |
| Helianthus annuus | HanXRQChr01 | 6 | CH_han_629 | 3 | 4 | 0.00000407592 |
| Lupinus albus | Lalb_Chr12 | 6 | CH_lal_174 | 4 | 12 | 0.000000045029 |
| Lotus japonicus | chr3 | 6 | CH_lja_184 | 4 | 11 | 0.000000119272 |
| Lactuca sativa | Lsat_1_v8_lg_1 | 6 | CH_lsa_135 | 5 | 6 | 0.0000000000013719 |
| Malus domestica | Chr02 | 6 | CH_mdo_55 | 7 | 9 | 2.68254e-19 |
| Malus domestica | Chr15 | 6 | CH_mdo_610 | 3 | 3 | 0.00000176016 |
| Malus domestica | Chr15 | 6 | CH_mdo_611 | 3 | 3 | 0.00000176016 |
| Manihot esculenta | Chromosome05 | 6 | CH_mes_282 | 5 | 45 | 0.000000100078 |
| Manihot esculenta | Chromosome01 | 6 | CH_mes_352 | 3 | 3 | 0.00000123051 |
| Medicago truncatula | chr2 | 6 | CH_mtr_739 | 3 | 4 | 0.00000222796 |
| Oryza sativa ssp. japonica | chr12 | 6 | CH_osa_104 | 5 | 10 | 0.000000000000926 |
| Petunia axillaris | Peaxi162Scf00046 | 6 | CH_pax_308 | 3 | 5 | 0.0000062347 |
| Punica granatum | NC_045128.1 | 6 | CH_pgr_155 | 4 | 4 | 0.00000000173024 |
| Prunus persica | Pp07 | 6 | CH_ppe_159 | 5 | 6 | 0.00000000000110355 |
| Papaver somniferum | NC_039360.1 | 6 | CH_pso_651 | 3 | 6 | 0.00000334914 |
| Phaseolus vulgaris | Chr10 | 6 | CH_pvu_110 | 5 | 12 | 0.00000000000968686 |
| Rhododendron simsii | chr09 | 6 | CH_rsi_66 | 9 | 24 | 3.9795e-22 |
| Striga asiatica | scaffold12 | 6 | CH_sas_69 | 3 | 5 | 0.00000117307 |
| Salvia bowleyana | GWHASIU00000006 | 6 | CH_sbo_313 | 3 | 3 | 0.000000173889 |
| Simmondsia chinensis | GWHAASQ00000019 | 6 | CH_sci_536 | 2 | 2 | 0.000851426 |
| Sequoiadendron giganteum | chr10 | 6 | CH_sgi_1251 | 3 | 3 | 0.000000783163 |
| Trochodendron aralioides | group0 | 6 | CH_tar_260 | 3 | 3 | 0.000000108135 |
| Trochodendron aralioides | group1 | 6 | CH_tar_975 | 2 | 2 | 0.000900549 |
| Theobroma cacao | Chromosome_4 | 6 | CH_tca_140 | 6 | 28 | 0.00000000000373424 |
| Trifolium pratense | Tp57577_TGAC_v2_LG5 | 6 | CH_tpr_448 | 3 | 11 | 0.0000495787 |
| Tripterygium wilfordii | NC_052252.1 | 6 | CH_twi_51 | 5 | 9 | 0.00000000000114992 |
| Vigna mungo | CM024078.1 | 6 | CH_vmu_287 | 3 | 10 | 0.0000262794 |
| Vitis vinifera | chr5 | 6 | CH_vvi_54 | 8 | 14 | 4.18171e-20 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |