Functional clusters
Information
- Type InterPro
- Description Protease Do-like, PDZ domain
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Arabidopsis lyrata | scaffold_2 | 5 | CH_aly_119 | 4 | 4 | 0.000000000108706 |
| Amaranthus hybridus | AmaHy_arrow1_Scaffold_11 | 5 | CH_amhyb_402 | 2 | 2 | 0.000505051 |
| Arabidopsis thaliana | Chr3 | 5 | CH_ath_644 | 2 | 2 | 0.000802177 |
| Amborella trichopoda | AmTr_v1.0_scaffold00066 | 5 | CH_atr_662 | 2 | 2 | 0.000794407 |
| Chenopodium quinoa | C_Quinoa_Scaffold_2689 | 5 | CH_cqu_161 | 4 | 4 | 0.0000000000670217 |
| Eucalyptus grandis | Chr09 | 5 | CH_egr_484 | 6 | 69 | 0.000000000154625 |
| Eutrema salsugineum | scaffold_9 | 5 | CH_esa_97 | 4 | 4 | 0.000000000092742 |
| Gossypium hirsutum | A07 | 5 | CH_ghi_157 | 5 | 5 | 0.00000000000000490706 |
| Lonicera japonica | GWHAAZE00000108 | 5 | CH_lonja_436 | 3 | 3 | 0.000000107598 |
| Nelumbo nucifera | chr3 | 5 | CH_nnu_568 | 2 | 2 | 0.000481684 |
| Physcomitrium patens | Chr13 | 5 | CH_ppa_203 | 3 | 16 | 0.000176275 |
| Prunus persica | Pp03 | 5 | CH_ppe_857 | 2 | 2 | 0.000745962 |
| Quercus lobata | 12 | 5 | CH_qlo_1366 | 3 | 22 | 0.000122955 |
| Rosa chinensis | RcHm_v2.0_Chr2 | 5 | CH_rch_1406 | 2 | 2 | 0.000597979 |
| Rhododendron simsii | chr13 | 5 | CH_rsi_205 | 7 | 54 | 0.00000000000641552 |
| Sechium edule | LG01 | 5 | CH_sed_511 | 2 | 2 | 0.000713419 |
| Arabidopsis lyrata | scaffold_2 | 6 | CH_aly_119 | 4 | 4 | 0.000000000108706 |
| Amaranthus hybridus | AmaHy_arrow1_Scaffold_11 | 6 | CH_amhyb_402 | 2 | 2 | 0.000505051 |
| Arabidopsis thaliana | Chr3 | 6 | CH_ath_644 | 2 | 2 | 0.000802177 |
| Amborella trichopoda | AmTr_v1.0_scaffold00066 | 6 | CH_atr_662 | 2 | 2 | 0.000794407 |
| Chenopodium quinoa | C_Quinoa_Scaffold_2689 | 6 | CH_cqu_161 | 4 | 4 | 0.0000000000670217 |
| Eucalyptus grandis | Chr09 | 6 | CH_egr_484 | 6 | 69 | 0.000000000154625 |
| Eutrema salsugineum | scaffold_9 | 6 | CH_esa_97 | 4 | 4 | 0.000000000092742 |
| Gossypium hirsutum | A07 | 6 | CH_ghi_157 | 5 | 5 | 0.00000000000000490706 |
| Lonicera japonica | GWHAAZE00000108 | 6 | CH_lonja_436 | 3 | 3 | 0.000000107598 |
| Nelumbo nucifera | chr3 | 6 | CH_nnu_568 | 2 | 2 | 0.000481684 |
| Physcomitrium patens | Chr13 | 6 | CH_ppa_203 | 3 | 16 | 0.000176275 |
| Prunus persica | Pp03 | 6 | CH_ppe_857 | 2 | 2 | 0.000745962 |
| Quercus lobata | 12 | 6 | CH_qlo_1366 | 3 | 22 | 0.000122955 |
| Rosa chinensis | RcHm_v2.0_Chr2 | 6 | CH_rch_1406 | 2 | 2 | 0.000597979 |
| Rhododendron simsii | chr13 | 6 | CH_rsi_205 | 7 | 54 | 0.00000000000641552 |
| Sechium edule | LG01 | 6 | CH_sed_511 | 2 | 2 | 0.000713419 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |