Functional clusters
Information
- Type InterPro
- Description Purple acid phosphatase, Fn3-like domain
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Acer truncatum | chr11 | 5 | CH_acertr_1013 | 2 | 2 | 0.00070497 |
| Actinidia chinensis | Lachesis_group1 | 5 | CH_ach_474 | 2 | 2 | 0.000325928 |
| Cannabis sativa | NC_044372.1 | 5 | CH_cansat_13 | 10 | 14 | 1.61275e-28 |
| Corylus avellana | 4 | 5 | CH_cav_285 | 3 | 3 | 0.000000740683 |
| Corylus avellana | 3 | 5 | CH_cav_374 | 3 | 5 | 0.0000074037 |
| Coffea canephora | chr11 | 5 | CH_ccan_79 | 4 | 23 | 0.000000000143801 |
| Citrus clementina | scaffold_4 | 5 | CH_ccl_731 | 2 | 2 | 0.000492187 |
| Carpinus fangiana | Cfa08 | 5 | CH_cfa_144 | 4 | 4 | 0.000000000273699 |
| Carya illinoinensis | Chr11 | 5 | CH_cil_80 | 6 | 7 | 1.21061e-17 |
| Citrullus lanatus | CG_Chr01 | 5 | CH_cla_355 | 2 | 2 | 0.000532269 |
| Carica papaya | supercontig_13 | 5 | CH_cpa_594 | 2 | 2 | 0.000570396 |
| Chenopodium quinoa | C_Quinoa_Scaffold_1534 | 5 | CH_cqu_400 | 3 | 3 | 0.00000074089 |
| Cucumis sativus L. | chr5 | 5 | CH_csa_462 | 2 | 2 | 0.000500856 |
| Daucus carota | DCARv2_Chr5 | 5 | CH_dca_702 | 2 | 2 | 0.000637775 |
| Davidia involucrata | GWHABJS00000008 | 5 | CH_din_826 | 2 | 2 | 0.000750188 |
| Davidia involucrata | GWHABJS00000019 | 5 | CH_din_827 | 2 | 2 | 0.000750188 |
| Durio zibethinus | NW_019168381.1 | 5 | CH_dzi_645 | 2 | 2 | 0.000973326 |
| Erigeron canadensis | Conyza_canadensis_scaffold:2 | 5 | CH_eca_342 | 3 | 5 | 0.00000105693 |
| Eucalyptus grandis | Chr10 | 5 | CH_egr_471 | 4 | 5 | 0.000000000105253 |
| Erythranthe guttata | scaffold_4 | 5 | CH_egut_732 | 2 | 2 | 0.000728147 |
| Fragaria vesca | Fvb5 | 5 | CH_fve_62 | 6 | 10 | 9.38642e-17 |
| Gossypium hirsutum | D13 | 5 | CH_ghi_678 | 3 | 7 | 0.0000061739 |
| Gossypium raimondii | Chr13 | 5 | CH_gra_254 | 3 | 3 | 0.000000150895 |
| Helianthus annuus | HanXRQChr16 | 5 | CH_han_544 | 3 | 4 | 0.00000107505 |
| Lonicera japonica | GWHAAZE00000005 | 5 | CH_lonja_697 | 3 | 11 | 0.0000496539 |
| Malus domestica | Chr06 | 5 | CH_mdo_485 | 3 | 3 | 0.000000181193 |
| Manihot esculenta | Chromosome05 | 5 | CH_mes_594 | 2 | 2 | 0.000183189 |
| Nicotiana tabacum | Nitab4.5_0000491 | 5 | CH_nta_285 | 2 | 2 | 0.000329182 |
| Olea europaea | scaffold409 | 5 | CH_oeu_634 | 2 | 2 | 0.000533789 |
| Oryza sativa ssp. japonica | chr12 | 5 | CH_osa_283 | 3 | 3 | 0.000000234293 |
| Petunia axillaris | Peaxi162Scf00046 | 5 | CH_pax_220 | 3 | 3 | 0.00000025988 |
| Physcomitrium patens | Chr08 | 5 | CH_ppa_333 | 2 | 2 | 0.000367636 |
| Prunus persica | Pp05 | 5 | CH_ppe_351 | 3 | 3 | 0.000000166944 |
| Quercus lobata | 10 | 5 | CH_qlo_132 | 8 | 9 | 3.49281e-22 |
| Quercus lobata | 4 | 5 | CH_qlo_442 | 7 | 49 | 0.00000000000978432 |
| Rosa chinensis | RcHm_v2.0_Chr7 | 5 | CH_rch_181 | 5 | 6 | 0.00000000000000636503 |
| Rhododendron simsii | chr08 | 5 | CH_rsi_363 | 3 | 3 | 0.0000000249861 |
| Salix brachista | GWHAAZH00000010 | 5 | CH_sbr_676 | 2 | 2 | 0.00063014 |
| Solanum lycopersicum | SL4.0ch07 | 5 | CH_sly_305 | 3 | 3 | 0.000000103353 |
| Selenicereus undatus | Scaffold_3410 | 5 | CH_sun_94 | 3 | 4 | 0.000000316785 |
| Theobroma cacao | Chromosome_3 | 5 | CH_tca_758 | 2 | 2 | 0.000732386 |
| Trifolium pratense | Tp57577_TGAC_v2_scaf_345 | 5 | CH_tpr_742 | 2 | 3 | 0.000681233 |
| Tripterygium wilfordii | NC_052250.1 | 5 | CH_twi_201 | 3 | 3 | 0.000000391636 |
| Vaccinium macrocarpon | chr5_Vaccinium_macrocarpon_Stevens_v1 | 5 | CH_vma_636 | 2 | 2 | 0.000278772 |
| Vigna mungo | CM024076.1 | 5 | CH_vmu_602 | 2 | 2 | 0.000646141 |
| Vanilla planifolia | CM028157.1 | 5 | CH_vpl_725 | 2 | 2 | 0.00073888 |
| Zea mays | 8 | 5 | CH_zma_527 | 2 | 2 | 0.000766969 |
| Acer truncatum | chr11 | 6 | CH_acertr_1013 | 2 | 2 | 0.00070497 |
| Actinidia chinensis | Lachesis_group1 | 6 | CH_ach_474 | 2 | 2 | 0.000325928 |
| Cannabis sativa | NC_044372.1 | 6 | CH_cansat_13 | 10 | 14 | 1.61275e-28 |
| Corylus avellana | 4 | 6 | CH_cav_285 | 3 | 3 | 0.000000740683 |
| Corylus avellana | 3 | 6 | CH_cav_374 | 3 | 5 | 0.0000074037 |
| Coffea canephora | chr11 | 6 | CH_ccan_79 | 4 | 23 | 0.000000000143801 |
| Citrus clementina | scaffold_4 | 6 | CH_ccl_731 | 2 | 2 | 0.000492187 |
| Carpinus fangiana | Cfa08 | 6 | CH_cfa_144 | 4 | 4 | 0.000000000273699 |
| Carya illinoinensis | Chr11 | 6 | CH_cil_80 | 6 | 7 | 1.21061e-17 |
| Citrullus lanatus | CG_Chr01 | 6 | CH_cla_355 | 2 | 2 | 0.000532269 |
| Cucumis melo | chr09 | 6 | CH_cme_433 | 2 | 2 | 0.000400267 |
| Carica papaya | supercontig_13 | 6 | CH_cpa_594 | 2 | 2 | 0.000570396 |
| Chenopodium quinoa | C_Quinoa_Scaffold_1534 | 6 | CH_cqu_400 | 3 | 3 | 0.00000074089 |
| Cucumis sativus L. | chr5 | 6 | CH_csa_462 | 2 | 2 | 0.000500856 |
| Daucus carota | DCARv2_Chr5 | 6 | CH_dca_702 | 2 | 2 | 0.000637775 |
| Davidia involucrata | GWHABJS00000008 | 6 | CH_din_826 | 2 | 2 | 0.000750188 |
| Davidia involucrata | GWHABJS00000019 | 6 | CH_din_827 | 2 | 2 | 0.000750188 |
| Durio zibethinus | NW_019168381.1 | 6 | CH_dzi_645 | 2 | 2 | 0.000973326 |
| Erigeron canadensis | Conyza_canadensis_scaffold:2 | 6 | CH_eca_342 | 3 | 5 | 0.00000105693 |
| Eucalyptus grandis | Chr10 | 6 | CH_egr_471 | 4 | 5 | 0.000000000105253 |
| Erythranthe guttata | scaffold_4 | 6 | CH_egut_732 | 2 | 2 | 0.000728147 |
| Fragaria x ananassa | Fvb5-1 | 6 | CH_fan_182 | 4 | 5 | 0.000000000290767 |
| Fragaria vesca | Fvb5 | 6 | CH_fve_62 | 6 | 10 | 9.38642e-17 |
| Gossypium hirsutum | D13 | 6 | CH_ghi_678 | 3 | 7 | 0.0000061739 |
| Gossypium raimondii | Chr13 | 6 | CH_gra_254 | 3 | 3 | 0.000000150895 |
| Helianthus annuus | HanXRQChr16 | 6 | CH_han_544 | 3 | 4 | 0.00000107505 |
| Lonicera japonica | GWHAAZE00000005 | 6 | CH_lonja_697 | 3 | 11 | 0.0000496539 |
| Malus domestica | Chr06 | 6 | CH_mdo_485 | 3 | 3 | 0.000000181193 |
| Manihot esculenta | Chromosome05 | 6 | CH_mes_594 | 2 | 2 | 0.000183189 |
| Nicotiana tabacum | Nitab4.5_0000491 | 6 | CH_nta_285 | 2 | 2 | 0.000329182 |
| Olea europaea | scaffold409 | 6 | CH_oeu_634 | 2 | 2 | 0.000533789 |
| Oryza sativa ssp. japonica | chr12 | 6 | CH_osa_283 | 3 | 3 | 0.000000234293 |
| Petunia axillaris | Peaxi162Scf00046 | 6 | CH_pax_220 | 3 | 3 | 0.00000025988 |
| Physcomitrium patens | Chr08 | 6 | CH_ppa_333 | 2 | 2 | 0.000367636 |
| Prunus persica | Pp05 | 6 | CH_ppe_351 | 3 | 3 | 0.000000166944 |
| Quercus lobata | 10 | 6 | CH_qlo_132 | 8 | 9 | 3.49281e-22 |
| Quercus lobata | 4 | 6 | CH_qlo_442 | 7 | 49 | 0.00000000000978432 |
| Rosa chinensis | RcHm_v2.0_Chr7 | 6 | CH_rch_181 | 5 | 6 | 0.00000000000000636503 |
| Rhododendron simsii | chr08 | 6 | CH_rsi_363 | 3 | 3 | 0.0000000249861 |
| Salix brachista | GWHAAZH00000010 | 6 | CH_sbr_676 | 2 | 2 | 0.00063014 |
| Solanum lycopersicum | SL4.0ch07 | 6 | CH_sly_305 | 3 | 3 | 0.000000103353 |
| Selenicereus undatus | Scaffold_3410 | 6 | CH_sun_94 | 3 | 4 | 0.000000316785 |
| Theobroma cacao | Chromosome_3 | 6 | CH_tca_758 | 2 | 2 | 0.000732386 |
| Trifolium pratense | Tp57577_TGAC_v2_scaf_345 | 6 | CH_tpr_742 | 2 | 3 | 0.000681233 |
| Tripterygium wilfordii | NC_052250.1 | 6 | CH_twi_201 | 3 | 3 | 0.000000391636 |
| Vaccinium macrocarpon | chr5_Vaccinium_macrocarpon_Stevens_v1 | 6 | CH_vma_636 | 2 | 2 | 0.000278772 |
| Vigna mungo | CM024076.1 | 6 | CH_vmu_602 | 2 | 2 | 0.000646141 |
| Vanilla planifolia | CM028157.1 | 6 | CH_vpl_725 | 2 | 2 | 0.00073888 |
| Zea mays | 8 | 6 | CH_zma_527 | 2 | 2 | 0.000766969 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |