Functional clusters
Information
- Type InterPro
- Description Phylloplanin-like
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Arabidopsis lyrata | scaffold_3 | 5 | CH_aly_691 | 2 | 2 | 0.000660044 |
| Arabidopsis thaliana | Chr2 | 5 | CH_ath_650 | 2 | 3 | 0.000859439 |
| Brassica carinata | ChrB03 | 5 | CH_bca_746 | 3 | 3 | 0.000000911628 |
| Brassica carinata | ChrB03 | 5 | CH_bca_918 | 3 | 4 | 0.00000364595 |
| Brassica rapa | A03 | 5 | CH_bra_510 | 3 | 17 | 0.000412638 |
| Camellia sinensis var. sinensis | Chr5 | 5 | CH_camsi_1056 | 2 | 3 | 0.000137561 |
| Citrus clementina | scaffold_9 | 5 | CH_ccl_559 | 2 | 2 | 0.0000820311 |
| Cardamine hirsuta | Chr3 | 5 | CH_chi_304 | 3 | 3 | 0.000000401335 |
| Carya illinoinensis | Chr02 | 5 | CH_cil_198 | 4 | 4 | 0.000000000050012 |
| Carya illinoinensis | Chr02 | 5 | CH_cil_219 | 4 | 5 | 0.000000000250027 |
| Capsella rubella | scaffold_1 | 5 | CH_cru_267 | 3 | 3 | 0.000000280668 |
| Cucumis sativus L. | chr3 | 5 | CH_csa_167 | 3 | 3 | 0.0000000418111 |
| Daucus carota | DCARv2_Chr2 | 5 | CH_dca_16 | 7 | 9 | 2.18247e-18 |
| Daucus carota | DCARv2_Chr8 | 5 | CH_dca_349 | 3 | 4 | 0.0000136628 |
| Erigeron canadensis | Conyza_canadensis_scaffold:4 | 5 | CH_eca_198 | 4 | 17 | 0.0000000096699 |
| Eucalyptus grandis | Chr11 | 5 | CH_egr_1199 | 2 | 2 | 0.000175582 |
| Erythranthe guttata | scaffold_9 | 5 | CH_egut_674 | 2 | 2 | 0.000436888 |
| Eutrema salsugineum | scaffold_5 | 5 | CH_esa_170 | 3 | 3 | 0.0000000869853 |
| Fragaria vesca | Fvb4 | 5 | CH_fve_329 | 3 | 7 | 0.00000018218 |
| Helianthus annuus | HanXRQChr03 | 5 | CH_han_378 | 5 | 57 | 0.0000000175569 |
| Nicotiana tabacum | Nitab4.5_0000194 | 5 | CH_nta_332 | 2 | 2 | 0.000658364 |
| Nicotiana tabacum | Nitab4.5_0000123 | 5 | CH_nta_333 | 2 | 2 | 0.000658364 |
| Oryza sativa ssp. japonica | chr07 | 5 | CH_osa_661 | 2 | 2 | 0.000316874 |
| Oryza sativa ssp. japonica | chr03 | 5 | CH_osa_662 | 2 | 2 | 0.000316874 |
| Punica granatum | NC_045131.1 | 5 | CH_pgr_102 | 4 | 4 | 0.00000000000633786 |
| Prunus persica | Pp01 | 5 | CH_ppe_611 | 2 | 2 | 0.0000745962 |
| Quercus lobata | 6 | 5 | CH_qlo_13 | 15 | 17 | 1.66423e-49 |
| Salvia bowleyana | GWHASIU00000002 | 5 | CH_sbo_291 | 4 | 28 | 0.0000000866614 |
| Salvia bowleyana | GWHASIU00000007 | 5 | CH_sbo_746 | 2 | 2 | 0.00068247 |
| Sechium edule | LG12 | 5 | CH_sed_473 | 2 | 2 | 0.000428052 |
| Solanum lycopersicum | SL4.0ch09 | 5 | CH_sly_860 | 2 | 3 | 0.000528221 |
| Solanum tuberosum | ST4.03ch09 | 5 | CH_stu_259 | 4 | 11 | 0.0000000046605 |
| Zea mays | 1 | 5 | CH_zma_470 | 2 | 3 | 0.000460162 |
| Arabidopsis lyrata | scaffold_3 | 6 | CH_aly_691 | 2 | 2 | 0.000660044 |
| Arabidopsis thaliana | Chr2 | 6 | CH_ath_650 | 2 | 3 | 0.000859439 |
| Brassica carinata | ChrB03 | 6 | CH_bca_746 | 3 | 3 | 0.000000911628 |
| Brassica carinata | ChrB03 | 6 | CH_bca_918 | 3 | 4 | 0.00000364595 |
| Brassica rapa | A03 | 6 | CH_bra_510 | 3 | 17 | 0.000412638 |
| Camellia sinensis var. sinensis | Chr5 | 6 | CH_camsi_1056 | 2 | 3 | 0.000137561 |
| Citrus clementina | scaffold_9 | 6 | CH_ccl_559 | 2 | 2 | 0.0000820311 |
| Cardamine hirsuta | Chr3 | 6 | CH_chi_304 | 3 | 3 | 0.000000401335 |
| Carya illinoinensis | Chr02 | 6 | CH_cil_198 | 4 | 4 | 0.000000000050012 |
| Carya illinoinensis | Chr02 | 6 | CH_cil_219 | 4 | 5 | 0.000000000250027 |
| Cucumis melo | chr06 | 6 | CH_cme_388 | 2 | 2 | 0.000200133 |
| Capsella rubella | scaffold_1 | 6 | CH_cru_267 | 3 | 3 | 0.000000280668 |
| Cucumis sativus L. | chr3 | 6 | CH_csa_167 | 3 | 3 | 0.0000000418111 |
| Daucus carota | DCARv2_Chr2 | 6 | CH_dca_16 | 7 | 9 | 2.18247e-18 |
| Daucus carota | DCARv2_Chr8 | 6 | CH_dca_349 | 3 | 4 | 0.0000136628 |
| Erigeron canadensis | Conyza_canadensis_scaffold:4 | 6 | CH_eca_198 | 4 | 17 | 0.0000000096699 |
| Eucalyptus grandis | Chr11 | 6 | CH_egr_1199 | 2 | 2 | 0.000175582 |
| Erythranthe guttata | scaffold_9 | 6 | CH_egut_674 | 2 | 2 | 0.000436888 |
| Eutrema salsugineum | scaffold_5 | 6 | CH_esa_170 | 3 | 3 | 0.0000000869853 |
| Fragaria x ananassa | Fvb4-3 | 6 | CH_fan_413 | 3 | 7 | 0.000000629043 |
| Fragaria vesca | Fvb4 | 6 | CH_fve_329 | 3 | 7 | 0.00000018218 |
| Helianthus annuus | HanXRQChr03 | 6 | CH_han_378 | 5 | 57 | 0.0000000175569 |
| Nicotiana tabacum | Nitab4.5_0000194 | 6 | CH_nta_332 | 2 | 2 | 0.000658364 |
| Nicotiana tabacum | Nitab4.5_0000123 | 6 | CH_nta_333 | 2 | 2 | 0.000658364 |
| Oryza sativa ssp. japonica | chr07 | 6 | CH_osa_661 | 2 | 2 | 0.000316874 |
| Oryza sativa ssp. japonica | chr03 | 6 | CH_osa_662 | 2 | 2 | 0.000316874 |
| Punica granatum | NC_045131.1 | 6 | CH_pgr_102 | 4 | 4 | 0.00000000000633786 |
| Prunus persica | Pp01 | 6 | CH_ppe_611 | 2 | 2 | 0.0000745962 |
| Quercus lobata | 6 | 6 | CH_qlo_13 | 15 | 17 | 1.66423e-49 |
| Salvia bowleyana | GWHASIU00000002 | 6 | CH_sbo_291 | 4 | 28 | 0.0000000866614 |
| Salvia bowleyana | GWHASIU00000007 | 6 | CH_sbo_746 | 2 | 2 | 0.00068247 |
| Sechium edule | LG12 | 6 | CH_sed_473 | 2 | 2 | 0.000428052 |
| Solanum lycopersicum | SL4.0ch09 | 6 | CH_sly_860 | 2 | 3 | 0.000528221 |
| Solanum tuberosum | ST4.03ch09 | 6 | CH_stu_259 | 4 | 11 | 0.0000000046605 |
| Zea mays | 1 | 6 | CH_zma_470 | 2 | 3 | 0.000460162 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |