Functional clusters
Information
- Type InterPro
- Description Tapetum determinant 1
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Acer truncatum | chr7 | 5 | CH_acertr_165 | 4 | 6 | 0.00000000198604 |
| Arabidopsis lyrata | scaffold_7 | 5 | CH_aly_71 | 5 | 6 | 0.0000000000000478331 |
| Arachis hypogaea | arahy.Tifrunner.gnm1.Arahy.14 | 5 | CH_arhy_816 | 3 | 4 | 0.0000176128 |
| Arachis hypogaea | arahy.Tifrunner.gnm1.Arahy.04 | 5 | CH_arhy_877 | 3 | 5 | 0.000044019 |
| Arabidopsis thaliana | Chr4 | 5 | CH_ath_100 | 4 | 6 | 0.0000000000370334 |
| Amborella trichopoda | AmTr_v1.0_scaffold00016 | 5 | CH_atr_136 | 4 | 5 | 0.00000000157904 |
| Brassica napus | A01 | 5 | CH_bna_289 | 6 | 56 | 0.00000000144319 |
| Brassica napus | C01 | 5 | CH_bna_324 | 6 | 68 | 0.00000000485209 |
| Brassica napus | A02 | 5 | CH_bna_804 | 3 | 4 | 0.0000102513 |
| Brassica napus | C02 | 5 | CH_bna_897 | 3 | 5 | 0.0000256228 |
| Cardamine hirsuta | Chr7 | 5 | CH_chi_292 | 3 | 4 | 0.000000286643 |
| Citrullus lanatus | CG_Chr05 | 5 | CH_cla_354 | 2 | 2 | 0.000532269 |
| Capsella rubella | scaffold_7 | 5 | CH_cru_249 | 3 | 3 | 0.000000160382 |
| Erythranthe guttata | scaffold_11 | 5 | CH_egut_430 | 3 | 5 | 0.0000174873 |
| Eutrema salsugineum | scaffold_1 | 5 | CH_esa_215 | 3 | 3 | 0.00000143526 |
| Fragaria vesca | Fvb2 | 5 | CH_fve_134 | 5 | 9 | 0.0000000000146371 |
| Glycine max | Gm10 | 5 | CH_gma_487 | 3 | 4 | 0.00000837395 |
| Lupinus albus | Lalb_Chr13 | 5 | CH_lal_341 | 3 | 4 | 0.00000925243 |
| Lotus japonicus | chr4 | 5 | CH_lja_109 | 4 | 4 | 0.00000000261098 |
| Lactuca sativa | Lsat_1_v8_lg_6 | 5 | CH_lsa_388 | 3 | 3 | 0.000000332904 |
| Magnolia biondii | Chr07 | 5 | CH_mbi_194 | 6 | 46 | 0.000000000052291 |
| Marchantia polymorpha | scaffold_20 | 5 | CH_mpo_219 | 2 | 2 | 0.000662654 |
| Medicago truncatula | chr1 | 5 | CH_mtr_724 | 3 | 3 | 0.00000206626 |
| Medicago truncatula | chr2 | 5 | CH_mtr_955 | 3 | 6 | 0.000041294 |
| Nelumbo nucifera | chr1 | 5 | CH_nnu_612 | 2 | 2 | 0.000722526 |
| Oryza sativa ssp. japonica | chr11 | 5 | CH_osa_456 | 3 | 9 | 0.0000421311 |
| Oryza sativa ssp. japonica | chr12 | 5 | CH_osa_740 | 3 | 22 | 0.000770747 |
| Petunia axillaris | Peaxi162Scf00063 | 5 | CH_pax_68 | 5 | 7 | 0.00000000000496492 |
| Prunus persica | Pp01 | 5 | CH_ppe_350 | 3 | 3 | 0.000000166944 |
| Papaver somniferum | NC_039363.1 | 5 | CH_pso_675 | 3 | 5 | 0.00000426263 |
| Quercus lobata | 7 | 5 | CH_qlo_991 | 3 | 4 | 0.00000191893 |
| Rosa chinensis | RcHm_v2.0_Chr6 | 5 | CH_rch_698 | 3 | 5 | 0.000000834234 |
| Rhododendron simsii | chr04 | 5 | CH_rsi_497 | 4 | 28 | 0.00000207193 |
| Striga asiatica | scaffold71 | 5 | CH_sas_236 | 2 | 2 | 0.000625371 |
| Salvia bowleyana | GWHASIU00000003 | 5 | CH_sbo_770 | 2 | 3 | 0.00081892 |
| Simmondsia chinensis | GWHAASQ00000003 | 5 | CH_sci_534 | 2 | 2 | 0.000851426 |
| Sequoiadendron giganteum | chr2 | 5 | CH_sgi_363 | 5 | 6 | 0.0000000000000141933 |
| Selaginella moellendorffii | scaffold_13 | 5 | CH_smo_331 | 2 | 2 | 0.000560224 |
| Schrenkiella parvula | ch2-4 | 5 | CH_spa_160 | 3 | 4 | 0.00000208257 |
| Trochodendron aralioides | group8 | 5 | CH_tar_362 | 4 | 21 | 0.00000191619 |
| Tarenaya hassleriana | NW_010966177.1 | 5 | CH_tha_41 | 5 | 10 | 0.000000000020765 |
| Vanilla planifolia | CM028160.1 | 5 | CH_vpl_186 | 4 | 23 | 0.000000747991 |
| Acer truncatum | chr7 | 6 | CH_acertr_165 | 4 | 6 | 0.00000000198604 |
| Arabidopsis lyrata | scaffold_7 | 6 | CH_aly_71 | 5 | 6 | 0.0000000000000478331 |
| Arachis hypogaea | arahy.Tifrunner.gnm1.Arahy.14 | 6 | CH_arhy_816 | 3 | 4 | 0.0000176128 |
| Arachis hypogaea | arahy.Tifrunner.gnm1.Arahy.04 | 6 | CH_arhy_877 | 3 | 5 | 0.000044019 |
| Arabidopsis thaliana | Chr4 | 6 | CH_ath_100 | 4 | 6 | 0.0000000000370334 |
| Amborella trichopoda | AmTr_v1.0_scaffold00016 | 6 | CH_atr_136 | 4 | 5 | 0.00000000157904 |
| Brassica napus | A01 | 6 | CH_bna_289 | 6 | 56 | 0.00000000144319 |
| Brassica napus | C01 | 6 | CH_bna_324 | 6 | 68 | 0.00000000485209 |
| Brassica napus | A02 | 6 | CH_bna_804 | 3 | 4 | 0.0000102513 |
| Brassica napus | C02 | 6 | CH_bna_897 | 3 | 5 | 0.0000256228 |
| Cardamine hirsuta | Chr7 | 6 | CH_chi_292 | 3 | 4 | 0.000000286643 |
| Citrullus lanatus | CG_Chr05 | 6 | CH_cla_354 | 2 | 2 | 0.000532269 |
| Capsella rubella | scaffold_7 | 6 | CH_cru_249 | 3 | 3 | 0.000000160382 |
| Erythranthe guttata | scaffold_11 | 6 | CH_egut_430 | 3 | 5 | 0.0000174873 |
| Eutrema salsugineum | scaffold_1 | 6 | CH_esa_215 | 3 | 3 | 0.00000143526 |
| Fragaria x ananassa | Fvb2-2 | 6 | CH_fan_238 | 4 | 7 | 0.00000000486407 |
| Fragaria vesca | Fvb2 | 6 | CH_fve_134 | 5 | 9 | 0.0000000000146371 |
| Glycine max | Gm10 | 6 | CH_gma_487 | 3 | 4 | 0.00000837395 |
| Lupinus albus | Lalb_Chr13 | 6 | CH_lal_341 | 3 | 4 | 0.00000925243 |
| Lotus japonicus | chr4 | 6 | CH_lja_109 | 4 | 4 | 0.00000000261098 |
| Lactuca sativa | Lsat_1_v8_lg_6 | 6 | CH_lsa_388 | 3 | 3 | 0.000000332904 |
| Magnolia biondii | Chr07 | 6 | CH_mbi_194 | 6 | 46 | 0.000000000052291 |
| Marchantia polymorpha | scaffold_20 | 6 | CH_mpo_219 | 2 | 2 | 0.000662654 |
| Medicago truncatula | chr1 | 6 | CH_mtr_724 | 3 | 3 | 0.00000206626 |
| Medicago truncatula | chr2 | 6 | CH_mtr_955 | 3 | 6 | 0.000041294 |
| Nelumbo nucifera | chr1 | 6 | CH_nnu_612 | 2 | 2 | 0.000722526 |
| Oryza sativa ssp. japonica | chr11 | 6 | CH_osa_456 | 3 | 9 | 0.0000421311 |
| Oryza sativa ssp. japonica | chr12 | 6 | CH_osa_740 | 3 | 22 | 0.000770747 |
| Petunia axillaris | Peaxi162Scf00063 | 6 | CH_pax_68 | 5 | 7 | 0.00000000000496492 |
| Prunus persica | Pp01 | 6 | CH_ppe_350 | 3 | 3 | 0.000000166944 |
| Papaver somniferum | NC_039363.1 | 6 | CH_pso_675 | 3 | 5 | 0.00000426263 |
| Quercus lobata | 7 | 6 | CH_qlo_991 | 3 | 4 | 0.00000191893 |
| Rosa chinensis | RcHm_v2.0_Chr6 | 6 | CH_rch_698 | 3 | 5 | 0.000000834234 |
| Rhododendron simsii | chr04 | 6 | CH_rsi_497 | 4 | 28 | 0.00000207193 |
| Striga asiatica | scaffold71 | 6 | CH_sas_236 | 2 | 2 | 0.000625371 |
| Salvia bowleyana | GWHASIU00000003 | 6 | CH_sbo_770 | 2 | 3 | 0.00081892 |
| Simmondsia chinensis | GWHAASQ00000003 | 6 | CH_sci_534 | 2 | 2 | 0.000851426 |
| Sequoiadendron giganteum | chr2 | 6 | CH_sgi_363 | 5 | 6 | 0.0000000000000141933 |
| Selaginella moellendorffii | scaffold_13 | 6 | CH_smo_331 | 2 | 2 | 0.000560224 |
| Schrenkiella parvula | ch2-4 | 6 | CH_spa_160 | 3 | 4 | 0.00000208257 |
| Trochodendron aralioides | group8 | 6 | CH_tar_362 | 4 | 21 | 0.00000191619 |
| Tarenaya hassleriana | NW_010966177.1 | 6 | CH_tha_41 | 5 | 10 | 0.000000000020765 |
| Vanilla planifolia | CM028160.1 | 6 | CH_vpl_186 | 4 | 23 | 0.000000747991 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |