Functional clusters
Information
- Type InterPro
- Description Chloroplast enhancing stress tolerance protein
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Actinidia chinensis | Lachesis_group17 | 5 | CH_ach_472 | 2 | 2 | 0.000325928 |
| Actinidia chinensis | Lachesis_group6 | 5 | CH_ach_473 | 2 | 2 | 0.000325928 |
| Arabidopsis lyrata | scaffold_8 | 5 | CH_aly_690 | 2 | 2 | 0.000660044 |
| Aquilegia oxysepala | CHR01 | 5 | CH_aox_349 | 2 | 2 | 0.0000801989 |
| Arachis hypogaea | arahy.Tifrunner.gnm1.Arahy.11 | 5 | CH_arhy_1035 | 2 | 2 | 0.00017963 |
| Arachis hypogaea | arahy.Tifrunner.gnm1.Arahy.01 | 5 | CH_arhy_1036 | 2 | 2 | 0.00017963 |
| Arabidopsis thaliana | Chr5 | 5 | CH_ath_523 | 2 | 2 | 0.000286492 |
| Brassica carinata | ChrB06 | 5 | CH_bca_362 | 4 | 6 | 0.00000000466921 |
| Cannabis sativa | NC_044378.1 | 5 | CH_cansat_473 | 2 | 2 | 0.000196993 |
| Cicer arietinum L. | Ca_LG7_v3 | 5 | CH_car_366 | 2 | 2 | 0.000466981 |
| Cicer arietinum L. | Ca_LG1_v3 | 5 | CH_car_367 | 2 | 2 | 0.000466981 |
| Corylus avellana | 2 | 5 | CH_cav_322 | 3 | 13 | 0.00000252088 |
| Coffea canephora | chr9 | 5 | CH_ccan_337 | 2 | 4 | 0.0000255533 |
| Citrus clementina | scaffold_2 | 5 | CH_ccl_558 | 2 | 2 | 0.0000820311 |
| Carpinus fangiana | Cfa01 | 5 | CH_cfa_177 | 3 | 3 | 0.00000000860393 |
| Cardamine hirsuta | Chr6 | 5 | CH_chi_800 | 2 | 2 | 0.000691204 |
| Carya illinoinensis | Chr09 | 5 | CH_cil_592 | 2 | 2 | 0.0000619828 |
| Capsella rubella | scaffold_8 | 5 | CH_cru_657 | 2 | 2 | 0.000731154 |
| Cucumis sativus L. | chr6 | 5 | CH_csa_427 | 2 | 2 | 0.000250428 |
| Erythranthe guttata | scaffold_13 | 5 | CH_egut_518 | 2 | 2 | 0.0000728147 |
| Eutrema salsugineum | scaffold_20 | 5 | CH_esa_530 | 2 | 2 | 0.000761499 |
| Fragaria vesca | Fvb3 | 5 | CH_fve_554 | 2 | 2 | 0.0000589102 |
| Lupinus albus | Lalb_Chr20 | 5 | CH_lal_719 | 2 | 2 | 0.000524824 |
| Lotus japonicus | chr6 | 5 | CH_lja_543 | 2 | 2 | 0.000429046 |
| Lotus japonicus | chr4 | 5 | CH_lja_544 | 2 | 2 | 0.000429046 |
| Magnolia biondii | Chr02 | 5 | CH_mbi_778 | 2 | 2 | 0.0000485661 |
| Malus domestica | Chr10 | 5 | CH_mdo_1127 | 2 | 2 | 0.000227527 |
| Malus domestica | Chr05 | 5 | CH_mdo_1128 | 2 | 2 | 0.000227527 |
| Medicago truncatula | chr8 | 5 | CH_mtr_1294 | 2 | 2 | 0.000410863 |
| Medicago truncatula | chr2 | 5 | CH_mtr_486 | 3 | 3 | 0.0000000253218 |
| Petunia axillaris | Peaxi162Scf00313 | 5 | CH_pax_566 | 2 | 2 | 0.000211067 |
| Prunus persica | Pp04 | 5 | CH_ppe_610 | 2 | 2 | 0.0000745962 |
| Pisum sativum | chr1LG6 | 5 | CH_psa_220 | 3 | 6 | 0.0000000816266 |
| Populus trichocarpa | Chr01 | 5 | CH_ptr_632 | 2 | 2 | 0.0001734 |
| Phaseolus vulgaris | Chr03 | 5 | CH_pvu_690 | 2 | 2 | 0.000734727 |
| Phaseolus vulgaris | Chr09 | 5 | CH_pvu_691 | 2 | 2 | 0.000734727 |
| Quercus lobata | 11 | 5 | CH_qlo_1289 | 2 | 2 | 0.0000516289 |
| Rosa chinensis | RcHm_v2.0_Chr5 | 5 | CH_rch_89 | 7 | 17 | 6.14803e-21 |
| Striga asiatica | scaffold423 | 5 | CH_sas_145 | 2 | 2 | 0.0000625371 |
| Salix brachista | GWHAAZH00000001 | 5 | CH_sbr_553 | 2 | 2 | 0.000189042 |
| Sechium edule | LG14 | 5 | CH_sed_413 | 2 | 2 | 0.000214026 |
| Solanum lycopersicum | SL4.0ch10 | 5 | CH_sly_741 | 2 | 2 | 0.000176082 |
| Schrenkiella parvula | ch2-4 | 5 | CH_spa_377 | 2 | 2 | 0.00078734 |
| Solanum pennellii | Spenn-ch10 | 5 | CH_spe_664 | 2 | 2 | 0.000133437 |
| Solanum tuberosum | ST4.03ch10 | 5 | CH_stu_298 | 3 | 3 | 0.0000000157569 |
| Tarenaya hassleriana | NW_010960187.1 | 5 | CH_tha_353 | 2 | 2 | 0.00069847 |
| Trifolium pratense | Tp57577_TGAC_v2_LG5 | 5 | CH_tpr_512 | 2 | 2 | 0.0000756974 |
| Tripterygium wilfordii | NC_052240.1 | 5 | CH_twi_413 | 2 | 2 | 0.000167252 |
| Vigna mungo | CM024072.1 | 5 | CH_vmu_544 | 2 | 2 | 0.000387685 |
| Zea mays | 3 | 5 | CH_zma_497 | 2 | 2 | 0.000511313 |
| Actinidia chinensis | Lachesis_group17 | 6 | CH_ach_472 | 2 | 2 | 0.000325928 |
| Actinidia chinensis | Lachesis_group6 | 6 | CH_ach_473 | 2 | 2 | 0.000325928 |
| Arabidopsis lyrata | scaffold_8 | 6 | CH_aly_690 | 2 | 2 | 0.000660044 |
| Aquilegia oxysepala | CHR01 | 6 | CH_aox_349 | 2 | 2 | 0.0000801989 |
| Arachis hypogaea | arahy.Tifrunner.gnm1.Arahy.11 | 6 | CH_arhy_1035 | 2 | 2 | 0.00017963 |
| Arachis hypogaea | arahy.Tifrunner.gnm1.Arahy.01 | 6 | CH_arhy_1036 | 2 | 2 | 0.00017963 |
| Arabidopsis thaliana | Chr5 | 6 | CH_ath_523 | 2 | 2 | 0.000286492 |
| Brassica carinata | ChrB06 | 6 | CH_bca_362 | 4 | 6 | 0.00000000466921 |
| Cannabis sativa | NC_044378.1 | 6 | CH_cansat_473 | 2 | 2 | 0.000196993 |
| Cicer arietinum L. | Ca_LG7_v3 | 6 | CH_car_366 | 2 | 2 | 0.000466981 |
| Cicer arietinum L. | Ca_LG1_v3 | 6 | CH_car_367 | 2 | 2 | 0.000466981 |
| Corylus avellana | 2 | 6 | CH_cav_322 | 3 | 13 | 0.00000252088 |
| Coffea canephora | chr9 | 6 | CH_ccan_337 | 2 | 4 | 0.0000255533 |
| Citrus clementina | scaffold_2 | 6 | CH_ccl_558 | 2 | 2 | 0.0000820311 |
| Carpinus fangiana | Cfa01 | 6 | CH_cfa_177 | 3 | 3 | 0.00000000860393 |
| Cardamine hirsuta | Chr6 | 6 | CH_chi_800 | 2 | 2 | 0.000691204 |
| Carya illinoinensis | Chr09 | 6 | CH_cil_592 | 2 | 2 | 0.0000619828 |
| Capsella rubella | scaffold_8 | 6 | CH_cru_657 | 2 | 2 | 0.000731154 |
| Cucumis sativus L. | chr6 | 6 | CH_csa_427 | 2 | 2 | 0.000250428 |
| Erythranthe guttata | scaffold_13 | 6 | CH_egut_518 | 2 | 2 | 0.0000728147 |
| Eutrema salsugineum | scaffold_20 | 6 | CH_esa_530 | 2 | 2 | 0.000761499 |
| Fragaria vesca | Fvb3 | 6 | CH_fve_554 | 2 | 2 | 0.0000589102 |
| Lupinus albus | Lalb_Chr20 | 6 | CH_lal_719 | 2 | 2 | 0.000524824 |
| Lotus japonicus | chr6 | 6 | CH_lja_543 | 2 | 2 | 0.000429046 |
| Lotus japonicus | chr4 | 6 | CH_lja_544 | 2 | 2 | 0.000429046 |
| Magnolia biondii | Chr02 | 6 | CH_mbi_778 | 2 | 2 | 0.0000485661 |
| Malus domestica | Chr10 | 6 | CH_mdo_1127 | 2 | 2 | 0.000227527 |
| Malus domestica | Chr05 | 6 | CH_mdo_1128 | 2 | 2 | 0.000227527 |
| Medicago truncatula | chr8 | 6 | CH_mtr_1294 | 2 | 2 | 0.000410863 |
| Medicago truncatula | chr2 | 6 | CH_mtr_486 | 3 | 3 | 0.0000000253218 |
| Petunia axillaris | Peaxi162Scf00313 | 6 | CH_pax_566 | 2 | 2 | 0.000211067 |
| Prunus persica | Pp04 | 6 | CH_ppe_610 | 2 | 2 | 0.0000745962 |
| Pisum sativum | chr1LG6 | 6 | CH_psa_220 | 3 | 6 | 0.0000000816266 |
| Populus trichocarpa | Chr01 | 6 | CH_ptr_632 | 2 | 2 | 0.0001734 |
| Phaseolus vulgaris | Chr03 | 6 | CH_pvu_690 | 2 | 2 | 0.000734727 |
| Phaseolus vulgaris | Chr09 | 6 | CH_pvu_691 | 2 | 2 | 0.000734727 |
| Quercus lobata | 11 | 6 | CH_qlo_1289 | 2 | 2 | 0.0000516289 |
| Rosa chinensis | RcHm_v2.0_Chr5 | 6 | CH_rch_89 | 7 | 17 | 6.14803e-21 |
| Striga asiatica | scaffold423 | 6 | CH_sas_145 | 2 | 2 | 0.0000625371 |
| Salix brachista | GWHAAZH00000001 | 6 | CH_sbr_553 | 2 | 2 | 0.000189042 |
| Sechium edule | LG14 | 6 | CH_sed_413 | 2 | 2 | 0.000214026 |
| Solanum lycopersicum | SL4.0ch10 | 6 | CH_sly_741 | 2 | 2 | 0.000176082 |
| Schrenkiella parvula | ch2-4 | 6 | CH_spa_377 | 2 | 2 | 0.00078734 |
| Solanum pennellii | Spenn-ch10 | 6 | CH_spe_664 | 2 | 2 | 0.000133437 |
| Solanum tuberosum | ST4.03ch10 | 6 | CH_stu_298 | 3 | 3 | 0.0000000157569 |
| Tarenaya hassleriana | NW_010960187.1 | 6 | CH_tha_353 | 2 | 2 | 0.00069847 |
| Trifolium pratense | Tp57577_TGAC_v2_LG5 | 6 | CH_tpr_512 | 2 | 2 | 0.0000756974 |
| Tripterygium wilfordii | NC_052240.1 | 6 | CH_twi_413 | 2 | 2 | 0.000167252 |
| Vigna mungo | CM024072.1 | 6 | CH_vmu_544 | 2 | 2 | 0.000387685 |
| Zea mays | 3 | 6 | CH_zma_497 | 2 | 2 | 0.000511313 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |