Functional clusters
Information
- Type InterPro
- Description TPR and ankyrin repeat-containing protein 1
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Anthoceros agrestis | Sc2ySwM_117 | 5 | CH_aag_75 | 3 | 3 | 0.00000000966212 |
| Actinidia chinensis | Lachesis_group16 | 5 | CH_ach_198 | 3 | 13 | 0.0000050613 |
| Arachis hypogaea | arahy.Tifrunner.gnm1.Arahy.12 | 5 | CH_arhy_1178 | 2 | 2 | 0.000449075 |
| Beta vulgaris | Chr1_EL10_PGA_scaffold3 | 5 | CH_bvu_438 | 2 | 2 | 0.000248375 |
| Camellia sinensis var. sinensis | Chr12 | 5 | CH_camsi_559 | 3 | 5 | 0.00000031537 |
| Cannabis sativa | NC_044376.1 | 5 | CH_cansat_76 | 6 | 24 | 0.000000000000774609 |
| Capsicum annuum | PGAv.1.6.scaffold289 | 5 | CH_can_307 | 3 | 4 | 0.000000163783 |
| Corylus avellana | 1 | 5 | CH_cav_345 | 3 | 10 | 0.00000423049 |
| Coffea canephora | chr0 | 5 | CH_ccan_346 | 2 | 3 | 0.0000255534 |
| Carpinus fangiana | Cfa04 | 5 | CH_cfa_87 | 5 | 7 | 0.000000000000108815 |
| Carya illinoinensis | Chr05 | 5 | CH_cil_52 | 7 | 11 | 1.47415e-21 |
| Corchorus olitorius | AWUE01019628.1 | 5 | CH_col_60 | 3 | 3 | 0.000000128001 |
| Cucumis sativus L. | chr5 | 5 | CH_csa_316 | 3 | 32 | 0.0000517831 |
| Daucus carota | DCARv2_Chr7 | 5 | CH_dca_549 | 2 | 2 | 0.000191333 |
| Durio zibethinus | NW_019167971.1 | 5 | CH_dzi_159 | 3 | 4 | 0.0000000128893 |
| Erigeron canadensis | Conyza_canadensis_scaffold:1 | 5 | CH_eca_2 | 12 | 30 | 5.4642e-32 |
| Erythranthe guttata | scaffold_7 | 5 | CH_egut_373 | 3 | 4 | 0.00000381669 |
| Fragaria vesca | Fvb4 | 5 | CH_fve_255 | 5 | 50 | 0.0000000106697 |
| Helianthus annuus | HanXRQChr17 | 5 | CH_han_1191 | 2 | 2 | 0.0008115 |
| Lupinus albus | Lalb_Chr07 | 5 | CH_lal_148 | 3 | 4 | 0.0000000165264 |
| Lonicera japonica | GWHAAZE00000003 | 5 | CH_lonja_297 | 4 | 6 | 0.00000000033825 |
| Lactuca sativa | Lsat_1_v8_lg_8 | 5 | CH_lsa_260 | 4 | 13 | 0.00000000436714 |
| Malus domestica | Chr09 | 5 | CH_mdo_628 | 3 | 8 | 0.00000241517 |
| Nicotiana tabacum | Nitab4.5_0000019 | 5 | CH_nta_67 | 3 | 3 | 0.0000000180611 |
| Pisum sativum | chr4LG4 | 5 | CH_psa_635 | 2 | 2 | 0.000312981 |
| Papaver somniferum | NW_020620381.1 | 5 | CH_pso_1113 | 3 | 11 | 0.000366826 |
| Papaver somniferum | NC_039361.1 | 5 | CH_pso_622 | 3 | 3 | 0.000002227 |
| Populus trichocarpa | Chr08 | 5 | CH_ptr_279 | 3 | 4 | 0.0000000200451 |
| Quercus lobata | 3 | 5 | CH_qlo_96 | 8 | 10 | 6.23962e-25 |
| Rosa chinensis | RcHm_v2.0_Chr4 | 5 | CH_rch_234 | 5 | 8 | 0.000000000000267267 |
| Rhododendron simsii | chr09 | 5 | CH_rsi_898 | 2 | 2 | 0.000387184 |
| Simmondsia chinensis | GWHAASQ00000002 | 5 | CH_sci_66 | 4 | 8 | 0.000000000129611 |
| Sechium edule | LG06 | 5 | CH_sed_75 | 4 | 8 | 0.0000000000762498 |
| Sequoiadendron giganteum | chr1 | 5 | CH_sgi_18 | 17 | 49 | 3.55637e-47 |
| Sapria himalayana | scaffold7_18583372 | 5 | CH_shi_11 | 6 | 10 | 2.88877e-18 |
| Solanum tuberosum | ST4.03ch03 | 5 | CH_stu_798 | 2 | 2 | 0.000307472 |
| Trochodendron aralioides | group0 | 5 | CH_tar_23 | 6 | 6 | 1.75547e-20 |
| Theobroma cacao | Chromosome_2 | 5 | CH_tca_248 | 3 | 3 | 0.00000000804614 |
| Trifolium pratense | Tp57577_TGAC_v2_LG5 | 5 | CH_tpr_316 | 3 | 3 | 0.00000312875 |
| Tripterygium wilfordii | NC_052234.1 | 5 | CH_twi_461 | 2 | 2 | 0.000334504 |
| Vaccinium macrocarpon | chr8_Vaccinium_macrocarpon_Stevens_v1 | 5 | CH_vma_250 | 3 | 4 | 0.000000518054 |
| Vaccinium macrocarpon | chr6_Vaccinium_macrocarpon_Stevens_v1 | 5 | CH_vma_813 | 2 | 2 | 0.000929238 |
| Anthoceros agrestis | Sc2ySwM_117 | 6 | CH_aag_75 | 3 | 3 | 0.00000000966212 |
| Actinidia chinensis | Lachesis_group16 | 6 | CH_ach_198 | 3 | 13 | 0.0000050613 |
| Arachis hypogaea | arahy.Tifrunner.gnm1.Arahy.12 | 6 | CH_arhy_1178 | 2 | 2 | 0.000449075 |
| Beta vulgaris | Chr1_EL10_PGA_scaffold3 | 6 | CH_bvu_438 | 2 | 2 | 0.000248375 |
| Camellia sinensis var. sinensis | Chr12 | 6 | CH_camsi_559 | 3 | 5 | 0.00000031537 |
| Cannabis sativa | NC_044376.1 | 6 | CH_cansat_76 | 6 | 24 | 0.000000000000774609 |
| Capsicum annuum | PGAv.1.6.scaffold289 | 6 | CH_can_307 | 3 | 4 | 0.000000163783 |
| Corylus avellana | 1 | 6 | CH_cav_345 | 3 | 10 | 0.00000423049 |
| Coffea canephora | chr0 | 6 | CH_ccan_346 | 2 | 3 | 0.0000255534 |
| Carpinus fangiana | Cfa04 | 6 | CH_cfa_87 | 5 | 7 | 0.000000000000108815 |
| Carya illinoinensis | Chr05 | 6 | CH_cil_52 | 7 | 11 | 1.47415e-21 |
| Cucumis melo | chr10 | 6 | CH_cme_336 | 3 | 58 | 0.000184726 |
| Corchorus olitorius | AWUE01019628.1 | 6 | CH_col_60 | 3 | 3 | 0.000000128001 |
| Cucumis sativus L. | chr5 | 6 | CH_csa_316 | 3 | 32 | 0.0000517831 |
| Daucus carota | DCARv2_Chr7 | 6 | CH_dca_549 | 2 | 2 | 0.000191333 |
| Durio zibethinus | NW_019167971.1 | 6 | CH_dzi_159 | 3 | 4 | 0.0000000128893 |
| Erigeron canadensis | Conyza_canadensis_scaffold:1 | 6 | CH_eca_2 | 12 | 30 | 5.4642e-32 |
| Erythranthe guttata | scaffold_7 | 6 | CH_egut_373 | 3 | 4 | 0.00000381669 |
| Fragaria x ananassa | Fvb4-4 | 6 | CH_fan_351 | 4 | 17 | 0.000000175059 |
| Fragaria x ananassa | Fvb4-2 | 6 | CH_fan_398 | 3 | 3 | 0.000000497659 |
| Fragaria x ananassa | Fvb1-1 | 6 | CH_fan_399 | 3 | 3 | 0.000000497659 |
| Fragaria vesca | Fvb4 | 6 | CH_fve_255 | 5 | 50 | 0.0000000106697 |
| Helianthus annuus | HanXRQChr17 | 6 | CH_han_1191 | 2 | 2 | 0.0008115 |
| Lupinus albus | Lalb_Chr07 | 6 | CH_lal_148 | 3 | 4 | 0.0000000165264 |
| Lonicera japonica | GWHAAZE00000003 | 6 | CH_lonja_297 | 4 | 6 | 0.00000000033825 |
| Lactuca sativa | Lsat_1_v8_lg_8 | 6 | CH_lsa_260 | 4 | 13 | 0.00000000436714 |
| Malus domestica | Chr09 | 6 | CH_mdo_628 | 3 | 8 | 0.00000241517 |
| Nicotiana tabacum | Nitab4.5_0000019 | 6 | CH_nta_67 | 3 | 3 | 0.0000000180611 |
| Pisum sativum | chr4LG4 | 6 | CH_psa_635 | 2 | 2 | 0.000312981 |
| Papaver somniferum | NW_020620381.1 | 6 | CH_pso_1113 | 3 | 11 | 0.000366826 |
| Papaver somniferum | NC_039361.1 | 6 | CH_pso_622 | 3 | 3 | 0.000002227 |
| Populus trichocarpa | Chr08 | 6 | CH_ptr_279 | 3 | 4 | 0.0000000200451 |
| Quercus lobata | 3 | 6 | CH_qlo_96 | 8 | 10 | 6.23962e-25 |
| Rosa chinensis | RcHm_v2.0_Chr4 | 6 | CH_rch_234 | 5 | 8 | 0.000000000000267267 |
| Rhododendron simsii | chr09 | 6 | CH_rsi_898 | 2 | 2 | 0.000387184 |
| Simmondsia chinensis | GWHAASQ00000002 | 6 | CH_sci_66 | 4 | 8 | 0.000000000129611 |
| Sechium edule | LG06 | 6 | CH_sed_75 | 4 | 8 | 0.0000000000762498 |
| Sequoiadendron giganteum | chr1 | 6 | CH_sgi_18 | 17 | 49 | 3.55637e-47 |
| Sapria himalayana | scaffold7_18583372 | 6 | CH_shi_11 | 6 | 10 | 2.88877e-18 |
| Solanum tuberosum | ST4.03ch03 | 6 | CH_stu_798 | 2 | 2 | 0.000307472 |
| Trochodendron aralioides | group0 | 6 | CH_tar_23 | 6 | 6 | 1.75547e-20 |
| Theobroma cacao | Chromosome_2 | 6 | CH_tca_248 | 3 | 3 | 0.00000000804614 |
| Trifolium pratense | Tp57577_TGAC_v2_LG5 | 6 | CH_tpr_316 | 3 | 3 | 0.00000312875 |
| Tripterygium wilfordii | NC_052234.1 | 6 | CH_twi_461 | 2 | 2 | 0.000334504 |
| Vaccinium macrocarpon | chr8_Vaccinium_macrocarpon_Stevens_v1 | 6 | CH_vma_250 | 3 | 4 | 0.000000518054 |
| Vaccinium macrocarpon | chr6_Vaccinium_macrocarpon_Stevens_v1 | 6 | CH_vma_813 | 2 | 2 | 0.000929238 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |