Functional clusters

Information

  • Type InterPro
  • Description TPR and ankyrin repeat-containing protein 1

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Anthoceros agrestis Sc2ySwM_117 5 CH_aag_75 3 3 0.00000000966212
Actinidia chinensis Lachesis_group16 5 CH_ach_198 3 13 0.0000050613
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.12 5 CH_arhy_1178 2 2 0.000449075
Beta vulgaris Chr1_EL10_PGA_scaffold3 5 CH_bvu_438 2 2 0.000248375
Camellia sinensis var. sinensis Chr12 5 CH_camsi_559 3 5 0.00000031537
Cannabis sativa NC_044376.1 5 CH_cansat_76 6 24 0.000000000000774609
Capsicum annuum PGAv.1.6.scaffold289 5 CH_can_307 3 4 0.000000163783
Corylus avellana 1 5 CH_cav_345 3 10 0.00000423049
Coffea canephora chr0 5 CH_ccan_346 2 3 0.0000255534
Carpinus fangiana Cfa04 5 CH_cfa_87 5 7 0.000000000000108815
Carya illinoinensis Chr05 5 CH_cil_52 7 11 1.47415e-21
Corchorus olitorius AWUE01019628.1 5 CH_col_60 3 3 0.000000128001
Cucumis sativus L. chr5 5 CH_csa_316 3 32 0.0000517831
Daucus carota DCARv2_Chr7 5 CH_dca_549 2 2 0.000191333
Durio zibethinus NW_019167971.1 5 CH_dzi_159 3 4 0.0000000128893
Erigeron canadensis Conyza_canadensis_scaffold:1 5 CH_eca_2 12 30 5.4642e-32
Erythranthe guttata scaffold_7 5 CH_egut_373 3 4 0.00000381669
Fragaria vesca Fvb4 5 CH_fve_255 5 50 0.0000000106697
Helianthus annuus HanXRQChr17 5 CH_han_1191 2 2 0.0008115
Lupinus albus Lalb_Chr07 5 CH_lal_148 3 4 0.0000000165264
Lonicera japonica GWHAAZE00000003 5 CH_lonja_297 4 6 0.00000000033825
Lactuca sativa Lsat_1_v8_lg_8 5 CH_lsa_260 4 13 0.00000000436714
Malus domestica Chr09 5 CH_mdo_628 3 8 0.00000241517
Nicotiana tabacum Nitab4.5_0000019 5 CH_nta_67 3 3 0.0000000180611
Pisum sativum chr4LG4 5 CH_psa_635 2 2 0.000312981
Papaver somniferum NW_020620381.1 5 CH_pso_1113 3 11 0.000366826
Papaver somniferum NC_039361.1 5 CH_pso_622 3 3 0.000002227
Populus trichocarpa Chr08 5 CH_ptr_279 3 4 0.0000000200451
Quercus lobata 3 5 CH_qlo_96 8 10 6.23962e-25
Rosa chinensis RcHm_v2.0_Chr4 5 CH_rch_234 5 8 0.000000000000267267
Rhododendron simsii chr09 5 CH_rsi_898 2 2 0.000387184
Simmondsia chinensis GWHAASQ00000002 5 CH_sci_66 4 8 0.000000000129611
Sechium edule LG06 5 CH_sed_75 4 8 0.0000000000762498
Sequoiadendron giganteum chr1 5 CH_sgi_18 17 49 3.55637e-47
Sapria himalayana scaffold7_18583372 5 CH_shi_11 6 10 2.88877e-18
Solanum tuberosum ST4.03ch03 5 CH_stu_798 2 2 0.000307472
Trochodendron aralioides group0 5 CH_tar_23 6 6 1.75547e-20
Theobroma cacao Chromosome_2 5 CH_tca_248 3 3 0.00000000804614
Trifolium pratense Tp57577_TGAC_v2_LG5 5 CH_tpr_316 3 3 0.00000312875
Tripterygium wilfordii NC_052234.1 5 CH_twi_461 2 2 0.000334504
Vaccinium macrocarpon chr8_Vaccinium_macrocarpon_Stevens_v1 5 CH_vma_250 3 4 0.000000518054
Vaccinium macrocarpon chr6_Vaccinium_macrocarpon_Stevens_v1 5 CH_vma_813 2 2 0.000929238
Anthoceros agrestis Sc2ySwM_117 6 CH_aag_75 3 3 0.00000000966212
Actinidia chinensis Lachesis_group16 6 CH_ach_198 3 13 0.0000050613
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.12 6 CH_arhy_1178 2 2 0.000449075
Beta vulgaris Chr1_EL10_PGA_scaffold3 6 CH_bvu_438 2 2 0.000248375
Camellia sinensis var. sinensis Chr12 6 CH_camsi_559 3 5 0.00000031537
Cannabis sativa NC_044376.1 6 CH_cansat_76 6 24 0.000000000000774609
Capsicum annuum PGAv.1.6.scaffold289 6 CH_can_307 3 4 0.000000163783
Corylus avellana 1 6 CH_cav_345 3 10 0.00000423049
Coffea canephora chr0 6 CH_ccan_346 2 3 0.0000255534
Carpinus fangiana Cfa04 6 CH_cfa_87 5 7 0.000000000000108815
Carya illinoinensis Chr05 6 CH_cil_52 7 11 1.47415e-21
Cucumis melo chr10 6 CH_cme_336 3 58 0.000184726
Corchorus olitorius AWUE01019628.1 6 CH_col_60 3 3 0.000000128001
Cucumis sativus L. chr5 6 CH_csa_316 3 32 0.0000517831
Daucus carota DCARv2_Chr7 6 CH_dca_549 2 2 0.000191333
Durio zibethinus NW_019167971.1 6 CH_dzi_159 3 4 0.0000000128893
Erigeron canadensis Conyza_canadensis_scaffold:1 6 CH_eca_2 12 30 5.4642e-32
Erythranthe guttata scaffold_7 6 CH_egut_373 3 4 0.00000381669
Fragaria x ananassa Fvb4-4 6 CH_fan_351 4 17 0.000000175059
Fragaria x ananassa Fvb4-2 6 CH_fan_398 3 3 0.000000497659
Fragaria x ananassa Fvb1-1 6 CH_fan_399 3 3 0.000000497659
Fragaria vesca Fvb4 6 CH_fve_255 5 50 0.0000000106697
Helianthus annuus HanXRQChr17 6 CH_han_1191 2 2 0.0008115
Lupinus albus Lalb_Chr07 6 CH_lal_148 3 4 0.0000000165264
Lonicera japonica GWHAAZE00000003 6 CH_lonja_297 4 6 0.00000000033825
Lactuca sativa Lsat_1_v8_lg_8 6 CH_lsa_260 4 13 0.00000000436714
Malus domestica Chr09 6 CH_mdo_628 3 8 0.00000241517
Nicotiana tabacum Nitab4.5_0000019 6 CH_nta_67 3 3 0.0000000180611
Pisum sativum chr4LG4 6 CH_psa_635 2 2 0.000312981
Papaver somniferum NW_020620381.1 6 CH_pso_1113 3 11 0.000366826
Papaver somniferum NC_039361.1 6 CH_pso_622 3 3 0.000002227
Populus trichocarpa Chr08 6 CH_ptr_279 3 4 0.0000000200451
Quercus lobata 3 6 CH_qlo_96 8 10 6.23962e-25
Rosa chinensis RcHm_v2.0_Chr4 6 CH_rch_234 5 8 0.000000000000267267
Rhododendron simsii chr09 6 CH_rsi_898 2 2 0.000387184
Simmondsia chinensis GWHAASQ00000002 6 CH_sci_66 4 8 0.000000000129611
Sechium edule LG06 6 CH_sed_75 4 8 0.0000000000762498
Sequoiadendron giganteum chr1 6 CH_sgi_18 17 49 3.55637e-47
Sapria himalayana scaffold7_18583372 6 CH_shi_11 6 10 2.88877e-18
Solanum tuberosum ST4.03ch03 6 CH_stu_798 2 2 0.000307472
Trochodendron aralioides group0 6 CH_tar_23 6 6 1.75547e-20
Theobroma cacao Chromosome_2 6 CH_tca_248 3 3 0.00000000804614
Trifolium pratense Tp57577_TGAC_v2_LG5 6 CH_tpr_316 3 3 0.00000312875
Tripterygium wilfordii NC_052234.1 6 CH_twi_461 2 2 0.000334504
Vaccinium macrocarpon chr8_Vaccinium_macrocarpon_Stevens_v1 6 CH_vma_250 3 4 0.000000518054
Vaccinium macrocarpon chr6_Vaccinium_macrocarpon_Stevens_v1 6 CH_vma_813 2 2 0.000929238

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001