Functional clusters
Information
- Type InterPro
- Description Nucleolar pre-ribosomal-associated protein 1
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Amborella trichopoda | AmTr_v1.0_scaffold00062 | 5 | CH_atr_623 | 2 | 5 | 0.000794313 |
| Camellia sinensis var. sinensis | Chr1 | 5 | CH_camsi_1100 | 2 | 2 | 0.000137564 |
| Citrus clementina | scaffold_1 | 5 | CH_ccl_314 | 3 | 6 | 0.000000201856 |
| Cardamine hirsuta | Chr7 | 5 | CH_chi_270 | 3 | 3 | 0.000000143334 |
| Gossypium hirsutum | A05 | 5 | CH_ghi_374 | 3 | 3 | 0.0000000042779 |
| Lonicera japonica | GWHAAZE00000004 | 5 | CH_lonja_137 | 5 | 5 | 9.64898e-17 |
| Oryza sativa ssp. japonica | chr04 | 5 | CH_osa_501 | 2 | 2 | 0.0000528123 |
| Quercus lobata | 8 | 5 | CH_qlo_766 | 4 | 25 | 0.0000000782353 |
| Sequoiadendron giganteum | chr10 | 5 | CH_sgi_595 | 4 | 6 | 0.0000000000260117 |
| Sapria himalayana | scaffold60_3140063 | 5 | CH_shi_95 | 3 | 3 | 0.00000000490454 |
| Vigna mungo | CM024075.1 | 5 | CH_vmu_365 | 2 | 2 | 0.0000646141 |
| Vanilla planifolia | CM028153.1 | 5 | CH_vpl_479 | 3 | 49 | 0.000150626 |
| Amborella trichopoda | AmTr_v1.0_scaffold00062 | 6 | CH_atr_623 | 2 | 5 | 0.000794313 |
| Camellia sinensis var. sinensis | Chr1 | 6 | CH_camsi_1100 | 2 | 2 | 0.000137564 |
| Citrus clementina | scaffold_1 | 6 | CH_ccl_314 | 3 | 6 | 0.000000201856 |
| Cardamine hirsuta | Chr7 | 6 | CH_chi_270 | 3 | 3 | 0.000000143334 |
| Gossypium hirsutum | A05 | 6 | CH_ghi_374 | 3 | 3 | 0.0000000042779 |
| Lonicera japonica | GWHAAZE00000004 | 6 | CH_lonja_137 | 5 | 5 | 9.64898e-17 |
| Oryza sativa ssp. japonica | chr04 | 6 | CH_osa_501 | 2 | 2 | 0.0000528123 |
| Quercus lobata | 8 | 6 | CH_qlo_766 | 4 | 25 | 0.0000000782353 |
| Sequoiadendron giganteum | chr10 | 6 | CH_sgi_595 | 4 | 6 | 0.0000000000260117 |
| Sapria himalayana | scaffold60_3140063 | 6 | CH_shi_95 | 3 | 3 | 0.00000000490454 |
| Vigna mungo | CM024075.1 | 6 | CH_vmu_365 | 2 | 2 | 0.0000646141 |
| Vanilla planifolia | CM028153.1 | 6 | CH_vpl_479 | 3 | 49 | 0.000150626 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |