Functional clusters
Information
- Type InterPro
- Description Sister chromatid cohesion protein Pds5
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Acer truncatum | chr13 | 5 | CH_acertr_130 | 5 | 17 | 0.000000000144198 |
| Actinidia chinensis | Lachesis_group28 | 5 | CH_ach_69 | 5 | 18 | 0.0000000047748 |
| Brassica carinata | ChrB02 | 5 | CH_bca_1100 | 3 | 5 | 0.0000157591 |
| Camellia sinensis var. sinensis | Chr14 | 5 | CH_camsi_363 | 5 | 36 | 0.00000000495335 |
| Capsicum annuum | PGAv.1.6.scaffold407 | 5 | CH_can_325 | 3 | 3 | 0.000000358301 |
| Coffea canephora | chr9 | 5 | CH_ccan_106 | 4 | 37 | 0.00000000171972 |
| Erigeron canadensis | Conyza_canadensis_scaffold:5 | 5 | CH_eca_39 | 6 | 7 | 8.60488e-17 |
| Eucalyptus grandis | Chr10 | 5 | CH_egr_212 | 6 | 7 | 2.27179e-17 |
| Erythranthe guttata | scaffold_9 | 5 | CH_egut_332 | 4 | 10 | 0.000000742349 |
| Erythranthe guttata | scaffold_4 | 5 | CH_egut_99 | 7 | 16 | 0.00000000000000426058 |
| Glycine max | Gm06 | 5 | CH_gma_405 | 3 | 3 | 0.00000121016 |
| Hydrangea macrophylla | Hma1.2p1_0135F.1 | 5 | CH_hma_664 | 2 | 2 | 0.000666519 |
| Lupinus albus | Lalb_Chr18 | 5 | CH_lal_279 | 3 | 3 | 0.00000187993 |
| Lotus japonicus | chr3 | 5 | CH_lja_313 | 3 | 5 | 0.00000644053 |
| Lonicera japonica | GWHAAZE00000009 | 5 | CH_lonja_1231 | 2 | 2 | 0.000898311 |
| Lonicera japonica | GWHAAZE00000002 | 5 | CH_lonja_1232 | 2 | 2 | 0.000898311 |
| Malus domestica | Chr08 | 5 | CH_mdo_264 | 4 | 6 | 0.000000000515236 |
| Olea europaea | chr21 | 5 | CH_oeu_217 | 3 | 3 | 0.00000348764 |
| Petunia axillaris | Peaxi162Scf00332 | 5 | CH_pax_202 | 3 | 3 | 0.000000148503 |
| Punica granatum | NC_045134.1 | 5 | CH_pgr_623 | 2 | 2 | 0.000750356 |
| Pisum sativum | chr7LG7 | 5 | CH_psa_135 | 4 | 5 | 0.00000000105377 |
| Phaseolus vulgaris | Chr09 | 5 | CH_pvu_294 | 3 | 3 | 0.000000680203 |
| Sapria himalayana | scaffold37_5694058 | 5 | CH_shi_152 | 3 | 3 | 0.0000000980909 |
| Solanum lycopersicum | SL4.0ch03 | 5 | CH_sly_110 | 6 | 11 | 0.0000000000000362052 |
| Solanum pennellii | Spenn-ch03 | 5 | CH_spe_201 | 4 | 7 | 0.00000000457167 |
| Solanum tuberosum | ST4.03ch03 | 5 | CH_stu_244 | 4 | 6 | 0.0000000019979 |
| Solanum tuberosum | ST4.03ch06 | 5 | CH_stu_393 | 3 | 5 | 0.000000649971 |
| Solanum tuberosum | ST4.03ch05 | 5 | CH_stu_394 | 3 | 3 | 0.000000649971 |
| Trochodendron aralioides | group8 | 5 | CH_tar_222 | 4 | 6 | 0.0000000471448 |
| Tripterygium wilfordii | NC_052241.1 | 5 | CH_twi_252 | 3 | 4 | 0.00000307654 |
| Vigna mungo | CM024073.1 | 5 | CH_vmu_208 | 3 | 3 | 0.000000751521 |
| Acer truncatum | chr13 | 6 | CH_acertr_130 | 5 | 17 | 0.000000000144198 |
| Actinidia chinensis | Lachesis_group28 | 6 | CH_ach_69 | 5 | 18 | 0.0000000047748 |
| Brassica carinata | ChrB02 | 6 | CH_bca_1100 | 3 | 5 | 0.0000157591 |
| Camellia sinensis var. sinensis | Chr14 | 6 | CH_camsi_363 | 5 | 36 | 0.00000000495335 |
| Capsicum annuum | PGAv.1.6.scaffold407 | 6 | CH_can_325 | 3 | 3 | 0.000000358301 |
| Coffea canephora | chr9 | 6 | CH_ccan_106 | 4 | 37 | 0.00000000171972 |
| Erigeron canadensis | Conyza_canadensis_scaffold:5 | 6 | CH_eca_39 | 6 | 7 | 8.60488e-17 |
| Eucalyptus grandis | Chr10 | 6 | CH_egr_212 | 6 | 7 | 2.27179e-17 |
| Erythranthe guttata | scaffold_9 | 6 | CH_egut_332 | 4 | 10 | 0.000000742349 |
| Erythranthe guttata | scaffold_4 | 6 | CH_egut_99 | 7 | 16 | 0.00000000000000426058 |
| Glycine max | Gm06 | 6 | CH_gma_405 | 3 | 3 | 0.00000121016 |
| Hydrangea macrophylla | Hma1.2p1_0135F.1 | 6 | CH_hma_664 | 2 | 2 | 0.000666519 |
| Lupinus albus | Lalb_Chr18 | 6 | CH_lal_279 | 3 | 3 | 0.00000187993 |
| Lotus japonicus | chr3 | 6 | CH_lja_313 | 3 | 5 | 0.00000644053 |
| Lonicera japonica | GWHAAZE00000009 | 6 | CH_lonja_1231 | 2 | 2 | 0.000898311 |
| Lonicera japonica | GWHAAZE00000002 | 6 | CH_lonja_1232 | 2 | 2 | 0.000898311 |
| Malus domestica | Chr08 | 6 | CH_mdo_264 | 4 | 6 | 0.000000000515236 |
| Olea europaea | chr21 | 6 | CH_oeu_217 | 3 | 3 | 0.00000348764 |
| Petunia axillaris | Peaxi162Scf00332 | 6 | CH_pax_202 | 3 | 3 | 0.000000148503 |
| Punica granatum | NC_045134.1 | 6 | CH_pgr_623 | 2 | 2 | 0.000750356 |
| Pisum sativum | chr7LG7 | 6 | CH_psa_135 | 4 | 5 | 0.00000000105377 |
| Phaseolus vulgaris | Chr09 | 6 | CH_pvu_294 | 3 | 3 | 0.000000680203 |
| Sapria himalayana | scaffold37_5694058 | 6 | CH_shi_152 | 3 | 3 | 0.0000000980909 |
| Solanum lycopersicum | SL4.0ch03 | 6 | CH_sly_110 | 6 | 11 | 0.0000000000000362052 |
| Solanum pennellii | Spenn-ch03 | 6 | CH_spe_201 | 4 | 7 | 0.00000000457167 |
| Solanum tuberosum | ST4.03ch03 | 6 | CH_stu_244 | 4 | 6 | 0.0000000019979 |
| Solanum tuberosum | ST4.03ch06 | 6 | CH_stu_393 | 3 | 5 | 0.000000649971 |
| Solanum tuberosum | ST4.03ch05 | 6 | CH_stu_394 | 3 | 3 | 0.000000649971 |
| Trochodendron aralioides | group8 | 6 | CH_tar_222 | 4 | 6 | 0.0000000471448 |
| Tripterygium wilfordii | NC_052241.1 | 6 | CH_twi_252 | 3 | 4 | 0.00000307654 |
| Vigna mungo | CM024073.1 | 6 | CH_vmu_208 | 3 | 3 | 0.000000751521 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |