Functional clusters
Information
- Type InterPro
- Description Vacuolar protein sorting-associated protein 54
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Actinidia chinensis | Lachesis_group7 | 5 | CH_ach_83 | 3 | 3 | 0.0000000177053 |
| Arachis hypogaea | arahy.Tifrunner.gnm1.Arahy.13 | 5 | CH_arhy_475 | 3 | 3 | 0.0000000752906 |
| Arachis hypogaea | arahy.Tifrunner.gnm1.Arahy.01 | 5 | CH_arhy_476 | 3 | 3 | 0.0000000752906 |
| Amborella trichopoda | AmTr_v1.0_scaffold00072 | 5 | CH_atr_410 | 2 | 3 | 0.0000794407 |
| Camellia sinensis var. sinensis | Contig1196 | 5 | CH_camsi_214 | 4 | 5 | 0.00000000000723146 |
| Corylus avellana | 2 | 5 | CH_cav_208 | 3 | 4 | 0.0000000352693 |
| Lonicera japonica | GWHAAZE00000001 | 5 | CH_lonja_784 | 2 | 2 | 0.0000598874 |
| Manihot esculenta | Chromosome03 | 5 | CH_mes_511 | 2 | 2 | 0.0000610631 |
| Petunia axillaris | Peaxi162Scf00267 | 5 | CH_pax_462 | 2 | 2 | 0.0000703556 |
| Sequoiadendron giganteum | chr9 | 5 | CH_sgi_825 | 3 | 3 | 0.00000000355983 |
| Sapria himalayana | scaffold71_2458239 | 5 | CH_shi_17 | 5 | 6 | 4.81132e-16 |
| Solanum lycopersicum | SL4.0ch02 | 5 | CH_sly_622 | 2 | 2 | 0.0000586941 |
| Trochodendron aralioides | group9 | 5 | CH_tar_704 | 2 | 2 | 0.00018011 |
| Vaccinium macrocarpon | chr5_Vaccinium_macrocarpon_Stevens_v1 | 5 | CH_vma_811 | 2 | 2 | 0.000929238 |
| Actinidia chinensis | Lachesis_group7 | 6 | CH_ach_83 | 3 | 3 | 0.0000000177053 |
| Arachis hypogaea | arahy.Tifrunner.gnm1.Arahy.13 | 6 | CH_arhy_475 | 3 | 3 | 0.0000000752906 |
| Arachis hypogaea | arahy.Tifrunner.gnm1.Arahy.01 | 6 | CH_arhy_476 | 3 | 3 | 0.0000000752906 |
| Amborella trichopoda | AmTr_v1.0_scaffold00072 | 6 | CH_atr_410 | 2 | 3 | 0.0000794407 |
| Camellia sinensis var. sinensis | Contig1196 | 6 | CH_camsi_214 | 4 | 5 | 0.00000000000723146 |
| Corylus avellana | 2 | 6 | CH_cav_208 | 3 | 4 | 0.0000000352693 |
| Lonicera japonica | GWHAAZE00000001 | 6 | CH_lonja_784 | 2 | 2 | 0.0000598874 |
| Manihot esculenta | Chromosome03 | 6 | CH_mes_511 | 2 | 2 | 0.0000610631 |
| Petunia axillaris | Peaxi162Scf00267 | 6 | CH_pax_462 | 2 | 2 | 0.0000703556 |
| Sequoiadendron giganteum | chr9 | 6 | CH_sgi_825 | 3 | 3 | 0.00000000355983 |
| Sapria himalayana | scaffold71_2458239 | 6 | CH_shi_17 | 5 | 6 | 4.81132e-16 |
| Solanum lycopersicum | SL4.0ch02 | 6 | CH_sly_622 | 2 | 2 | 0.0000586941 |
| Trochodendron aralioides | group9 | 6 | CH_tar_704 | 2 | 2 | 0.00018011 |
| Vaccinium macrocarpon | chr5_Vaccinium_macrocarpon_Stevens_v1 | 6 | CH_vma_811 | 2 | 2 | 0.000929238 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |