Functional clusters
Information
- Type InterPro
- Description Low-molecular-weight cysteine-rich protein
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Arabidopsis lyrata | scaffold_7 | 5 | CH_aly_67 | 5 | 5 | 0.0000000000000179395 |
| Arabidopsis thaliana | Chr4 | 5 | CH_ath_159 | 4 | 9 | 0.00000000439767 |
| Brassica carinata | ChrC02 | 5 | CH_bca_1988 | 3 | 18 | 0.000742161 |
| Brassica carinata | Contig281 | 5 | CH_bca_242 | 4 | 4 | 0.00000000017539 |
| Brassica carinata | Contig723 | 5 | CH_bca_744 | 3 | 3 | 0.000000911628 |
| Brassica carinata | ChrB08 | 5 | CH_bca_745 | 3 | 3 | 0.000000911628 |
| Brassica napus | A03 | 5 | CH_bna_1014 | 3 | 5 | 0.0000637425 |
| Brassica napus | A03 | 5 | CH_bna_361 | 5 | 20 | 0.0000000132271 |
| Brassica napus | C03 | 5 | CH_bna_534 | 4 | 10 | 0.000000496334 |
| Brassica napus | C07 | 5 | CH_bna_755 | 3 | 3 | 0.00000637792 |
| Brassica rapa | A03 | 5 | CH_bra_227 | 4 | 18 | 0.00000172299 |
| Cardamine hirsuta | Chr3 | 5 | CH_chi_302 | 3 | 3 | 0.000000401335 |
| Cardamine hirsuta | Chr7 | 5 | CH_chi_303 | 3 | 3 | 0.000000401335 |
| Capsella rubella | scaffold_7 | 5 | CH_cru_58 | 6 | 6 | 1.41235e-16 |
| Eucalyptus grandis | Chr03 | 5 | CH_egr_142 | 7 | 9 | 9.11892e-22 |
| Eutrema salsugineum | scaffold_1 | 5 | CH_esa_10 | 9 | 9 | 3.2122e-27 |
| Gossypium hirsutum | D08 | 5 | CH_ghi_100 | 6 | 6 | 6.4142e-20 |
| Gossypium hirsutum | A08 | 5 | CH_ghi_243 | 4 | 4 | 0.0000000000119941 |
| Glycine max | Gm15 | 5 | CH_gma_539 | 3 | 29 | 0.0000315578 |
| Gossypium raimondii | Chr04 | 5 | CH_gra_50 | 6 | 6 | 9.96679e-21 |
| Medicago truncatula | chr2 | 5 | CH_mtr_124 | 7 | 9 | 2.12741e-17 |
| Medicago truncatula | chr2 | 5 | CH_mtr_5 | 20 | 39 | 1.46461e-53 |
| Prunus persica | Pp01 | 5 | CH_ppe_555 | 3 | 21 | 0.000044355 |
| Rhododendron simsii | chr13 | 5 | CH_rsi_696 | 2 | 2 | 0.0000645307 |
| Schrenkiella parvula | ch7-5 | 5 | CH_spa_6 | 7 | 7 | 6.75744e-22 |
| Arabidopsis lyrata | scaffold_7 | 6 | CH_aly_67 | 5 | 5 | 0.0000000000000179395 |
| Arabidopsis thaliana | Chr4 | 6 | CH_ath_159 | 4 | 9 | 0.00000000439767 |
| Brassica carinata | ChrC02 | 6 | CH_bca_1988 | 3 | 18 | 0.000742161 |
| Brassica carinata | Contig281 | 6 | CH_bca_242 | 4 | 4 | 0.00000000017539 |
| Brassica carinata | Contig723 | 6 | CH_bca_744 | 3 | 3 | 0.000000911628 |
| Brassica carinata | ChrB08 | 6 | CH_bca_745 | 3 | 3 | 0.000000911628 |
| Brassica napus | A03 | 6 | CH_bna_1014 | 3 | 5 | 0.0000637425 |
| Brassica napus | A03 | 6 | CH_bna_361 | 5 | 20 | 0.0000000132271 |
| Brassica napus | C03 | 6 | CH_bna_534 | 4 | 10 | 0.000000496334 |
| Brassica napus | C07 | 6 | CH_bna_755 | 3 | 3 | 0.00000637792 |
| Brassica rapa | A03 | 6 | CH_bra_227 | 4 | 18 | 0.00000172299 |
| Cardamine hirsuta | Chr3 | 6 | CH_chi_302 | 3 | 3 | 0.000000401335 |
| Cardamine hirsuta | Chr7 | 6 | CH_chi_303 | 3 | 3 | 0.000000401335 |
| Capsella rubella | scaffold_7 | 6 | CH_cru_58 | 6 | 6 | 1.41235e-16 |
| Eucalyptus grandis | Chr03 | 6 | CH_egr_142 | 7 | 9 | 9.11892e-22 |
| Eutrema salsugineum | scaffold_1 | 6 | CH_esa_10 | 9 | 9 | 3.2122e-27 |
| Gossypium hirsutum | D08 | 6 | CH_ghi_100 | 6 | 6 | 6.4142e-20 |
| Gossypium hirsutum | A08 | 6 | CH_ghi_243 | 4 | 4 | 0.0000000000119941 |
| Glycine max | Gm15 | 6 | CH_gma_539 | 3 | 29 | 0.0000315578 |
| Gossypium raimondii | Chr04 | 6 | CH_gra_50 | 6 | 6 | 9.96679e-21 |
| Medicago truncatula | chr2 | 6 | CH_mtr_124 | 7 | 9 | 2.12741e-17 |
| Medicago truncatula | chr2 | 6 | CH_mtr_5 | 20 | 39 | 1.46461e-53 |
| Prunus persica | Pp01 | 6 | CH_ppe_555 | 3 | 21 | 0.000044355 |
| Rhododendron simsii | chr13 | 6 | CH_rsi_696 | 2 | 2 | 0.0000645307 |
| Schrenkiella parvula | ch7-5 | 6 | CH_spa_6 | 7 | 7 | 6.75744e-22 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |