Functional clusters
Information
- Type InterPro
- Description AT-hook motif nuclear-localized protein
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Aethionema arabicum | LG-9 | 5 | CH_aar_219 | 3 | 3 | 0.00000699196 |
| Brassica carinata | ChrC05 | 5 | CH_bca_1161 | 3 | 3 | 0.0000246688 |
| Brassica carinata | ChrB07 | 5 | CH_bca_1618 | 3 | 5 | 0.000246453 |
| Brassica napus | A06 | 5 | CH_bna_363 | 4 | 4 | 0.0000000138277 |
| Brassica napus | C05 | 5 | CH_bna_882 | 3 | 3 | 0.0000236491 |
| Brassica oleracea | C5 | 5 | CH_bol_436 | 3 | 3 | 0.00000958997 |
| Brassica rapa | A06 | 5 | CH_bra_123 | 4 | 4 | 0.00000000971423 |
| Capsicum annuum | PGAv.1.6.scaffold208 | 5 | CH_can_438 | 4 | 17 | 0.00000728544 |
| Carpinus fangiana | Cfa04 | 5 | CH_cfa_388 | 3 | 6 | 0.0000491669 |
| Erythranthe guttata | scaffold_7 | 5 | CH_egut_561 | 3 | 5 | 0.00020651 |
| Medicago truncatula | chr5 | 5 | CH_mtr_226 | 6 | 9 | 0.000000000000297207 |
| Medicago truncatula | chr4 | 5 | CH_mtr_612 | 4 | 7 | 0.000000337234 |
| Petunia axillaris | Peaxi162Scf00008 | 5 | CH_pax_208 | 4 | 6 | 0.000000166343 |
| Petunia axillaris | Peaxi162Scf00583 | 5 | CH_pax_86 | 5 | 6 | 0.000000000046846 |
| Pisum sativum | chr5LG3 | 5 | CH_psa_398 | 3 | 4 | 0.0000330306 |
| Quercus lobata | 8 | 5 | CH_qlo_1353 | 3 | 8 | 0.000101748 |
| Sequoiadendron giganteum | chr9 | 5 | CH_sgi_1230 | 3 | 3 | 0.000000587373 |
| Sequoiadendron giganteum | chr6 | 5 | CH_sgi_1231 | 3 | 3 | 0.000000587373 |
| Solanum lycopersicum | SL4.0ch04 | 5 | CH_sly_138 | 6 | 11 | 0.00000000000213805 |
| Aethionema arabicum | LG-9 | 6 | CH_aar_219 | 3 | 3 | 0.00000699196 |
| Brassica carinata | ChrC05 | 6 | CH_bca_1161 | 3 | 3 | 0.0000246688 |
| Brassica carinata | ChrB07 | 6 | CH_bca_1618 | 3 | 5 | 0.000246453 |
| Brassica napus | A06 | 6 | CH_bna_363 | 4 | 4 | 0.0000000138277 |
| Brassica napus | C05 | 6 | CH_bna_882 | 3 | 3 | 0.0000236491 |
| Brassica oleracea | C5 | 6 | CH_bol_436 | 3 | 3 | 0.00000958997 |
| Brassica rapa | A06 | 6 | CH_bra_123 | 4 | 4 | 0.00000000971423 |
| Capsicum annuum | PGAv.1.6.scaffold208 | 6 | CH_can_438 | 4 | 17 | 0.00000728544 |
| Carpinus fangiana | Cfa04 | 6 | CH_cfa_388 | 3 | 6 | 0.0000491669 |
| Erythranthe guttata | scaffold_7 | 6 | CH_egut_561 | 3 | 5 | 0.00020651 |
| Medicago truncatula | chr5 | 6 | CH_mtr_226 | 6 | 9 | 0.000000000000297207 |
| Medicago truncatula | chr4 | 6 | CH_mtr_612 | 4 | 7 | 0.000000337234 |
| Petunia axillaris | Peaxi162Scf00008 | 6 | CH_pax_208 | 4 | 6 | 0.000000166343 |
| Petunia axillaris | Peaxi162Scf00583 | 6 | CH_pax_86 | 5 | 6 | 0.000000000046846 |
| Pisum sativum | chr5LG3 | 6 | CH_psa_398 | 3 | 4 | 0.0000330306 |
| Quercus lobata | 8 | 6 | CH_qlo_1353 | 3 | 8 | 0.000101748 |
| Sequoiadendron giganteum | chr9 | 6 | CH_sgi_1230 | 3 | 3 | 0.000000587373 |
| Sequoiadendron giganteum | chr6 | 6 | CH_sgi_1231 | 3 | 3 | 0.000000587373 |
| Solanum lycopersicum | SL4.0ch04 | 6 | CH_sly_138 | 6 | 11 | 0.00000000000213805 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |