Functional clusters

Information

  • Type InterPro
  • Description Papain-like cysteine endopeptidase

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Aethionema arabicum LG-8 5 CH_aar_245 3 3 0.000028717
Aethionema arabicum LG-9 5 CH_aar_296 4 20 0.000137838
Arabidopsis lyrata scaffold_1 5 CH_aly_470 3 4 0.000106055
Aquilegia oxysepala CHR02 5 CH_aox_301 3 3 0.0000352545
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.13 5 CH_arhy_840 3 3 0.000023254
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.03 5 CH_arhy_841 3 3 0.000023254
Arabidopsis thaliana Chr1 5 CH_ath_657 3 12 0.00098711
Brassica carinata ChrC09 5 CH_bca_1344 3 3 0.0000726527
Brassica carinata ChrC05 5 CH_bca_750 4 6 0.000000977036
Brassica oleracea C1 5 CH_bol_591 3 4 0.0000972571
Beta vulgaris Chr8_EL10_PGA_scaffold4 5 CH_bvu_269 3 3 0.00000699185
Corylus avellana 2 5 CH_cav_106 8 51 0.00000000000474518
Coffea canephora chr6 5 CH_ccan_70 5 39 0.000000000047754
Citrus clementina scaffold_2 5 CH_ccl_491 3 3 0.0000550732
Citrus clementina scaffold_9 5 CH_ccl_743 3 5 0.000549671
Capsella rubella scaffold_1 5 CH_cru_617 3 5 0.000523891
Cucumis sativus L. chr4 5 CH_csa_244 4 12 0.00000333398
Davidia involucrata GWHABJS00000020 5 CH_din_108 8 46 0.00000000000148765
Davidia involucrata GWHABJS00000001 5 CH_din_78 9 53 0.0000000000000129903
Erigeron canadensis Conyza_canadensis_scaffold:7 5 CH_eca_281 4 7 0.000000193992
Erigeron canadensis Conyza_canadensis_scaffold:3 5 CH_eca_48 7 17 0.000000000000014744
Eucalyptus grandis Chr05 5 CH_egr_1247 3 3 0.000346967
Eucalyptus grandis Chr03 5 CH_egr_233 8 9 1.12385e-16
Eucalyptus grandis Chr04 5 CH_egr_30 18 25 2.47272e-39
Eucalyptus grandis Chr11 5 CH_egr_895 4 5 0.0000036493
Gossypium hirsutum A04 5 CH_ghi_330 5 6 0.000000000895373
Glycine max Gm06 5 CH_gma_18 17 61 7.02866e-31
Glycine max Gm12 5 CH_gma_35 9 9 5.19956e-22
Gossypium raimondii Chr09 5 CH_gra_29 12 16 3.11118e-28
Helianthus annuus HanXRQChr17 5 CH_han_16 12 12 2.91763e-30
Helianthus annuus HanXRQChr02 5 CH_han_313 5 6 0.00000000211608
Hydrangea macrophylla Hma1.2p1_0155F.1 5 CH_hma_48 5 5 0.0000000000485601
Hydrangea macrophylla Hma1.2p1_0178F.1 5 CH_hma_63 8 79 0.00000000118941
Lupinus albus Lalb_Chr01 5 CH_lal_361 3 3 0.0000225426
Lotus japonicus chr3 5 CH_lja_26 8 11 3.05003e-17
Lotus japonicus chr6 5 CH_lja_261 4 6 0.0000013507
Lotus japonicus chr3 5 CH_lja_345 6 72 0.0000200177
Magnolia biondii Chr07 5 CH_mbi_70 7 10 9.60751e-18
Malus domestica Chr17 5 CH_mdo_177 6 9 0.00000000000666149
Manihot esculenta Chromosome13 5 CH_mes_596 3 4 0.000204291
Medicago truncatula chr2 5 CH_mtr_371 7 41 0.000000000712769
Medicago truncatula chr4 5 CH_mtr_489 7 67 0.00000002702
Oryza sativa ssp. japonica chr09 5 CH_osa_94 6 8 0.000000000000234323
Pisum sativum chr4LG4 5 CH_psa_400 3 6 0.000037114
Populus trichocarpa Chr04 5 CH_ptr_28 11 12 1.49367e-27
Rosa chinensis RcHm_v2.0_Chr2 5 CH_rch_307 9 80 0.0000000000209872
Rosa chinensis RcHm_v2.0_Chr1 5 CH_rch_720 4 6 0.00000120753
Sequoiadendron giganteum chr6 5 CH_sgi_1543 3 6 0.0000323708
Solanum lycopersicum SL4.0ch02 5 CH_sly_114 8 36 0.000000000000083039
Schrenkiella parvula ch1-1 5 CH_spa_197 3 3 0.0000241772
Schrenkiella parvula ch3-1 5 CH_spa_198 3 3 0.0000241772
Theobroma cacao Chromosome_6 5 CH_tca_250 6 33 0.00000000914542
Tripterygium wilfordii NC_052233.1 5 CH_twi_103 5 6 0.000000000369539
Tripterygium wilfordii NC_052252.1 5 CH_twi_330 4 13 0.0000412798
Tripterygium wilfordii NC_052240.1 5 CH_twi_332 3 4 0.0000535236
Utricularia gibba unitig_699 5 CH_ugi_1 13 15 2.19542e-32
Utricularia gibba unitig_578 5 CH_ugi_107 5 38 0.0000534791
Vigna mungo CM024076.1 5 CH_vmu_100 6 21 0.00000000100182
Vanilla planifolia CM028150.1 5 CH_vpl_255 3 3 0.00000556883
Zea mays 6 5 CH_zma_532 3 5 0.000865026
Zea mays 9 5 CH_zma_86 5 5 0.000000000133252
Aethionema arabicum LG-8 6 CH_aar_245 3 3 0.000028717
Aethionema arabicum LG-9 6 CH_aar_296 4 20 0.000137838
Arabidopsis lyrata scaffold_1 6 CH_aly_470 3 4 0.000106055
Aquilegia oxysepala CHR02 6 CH_aox_301 3 3 0.0000352545
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.13 6 CH_arhy_840 3 3 0.000023254
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.03 6 CH_arhy_841 3 3 0.000023254
Arabidopsis thaliana Chr1 6 CH_ath_657 3 12 0.00098711
Brassica carinata ChrC09 6 CH_bca_1344 3 3 0.0000726527
Brassica carinata ChrC05 6 CH_bca_750 4 6 0.000000977036
Brassica oleracea C1 6 CH_bol_591 3 4 0.0000972571
Beta vulgaris Chr8_EL10_PGA_scaffold4 6 CH_bvu_269 3 3 0.00000699185
Corylus avellana 2 6 CH_cav_106 8 51 0.00000000000474518
Coffea canephora chr6 6 CH_ccan_70 5 39 0.000000000047754
Citrus clementina scaffold_2 6 CH_ccl_491 3 3 0.0000550732
Citrus clementina scaffold_9 6 CH_ccl_743 3 5 0.000549671
Capsella rubella scaffold_1 6 CH_cru_617 3 5 0.000523891
Cucumis sativus L. chr4 6 CH_csa_244 4 12 0.00000333398
Davidia involucrata GWHABJS00000020 6 CH_din_108 8 46 0.00000000000148765
Davidia involucrata GWHABJS00000001 6 CH_din_78 9 53 0.0000000000000129903
Erigeron canadensis Conyza_canadensis_scaffold:7 6 CH_eca_281 4 7 0.000000193992
Erigeron canadensis Conyza_canadensis_scaffold:3 6 CH_eca_48 7 17 0.000000000000014744
Eucalyptus grandis Chr05 6 CH_egr_1247 3 3 0.000346967
Eucalyptus grandis Chr03 6 CH_egr_233 8 9 1.12385e-16
Eucalyptus grandis Chr04 6 CH_egr_30 18 25 2.47272e-39
Eucalyptus grandis Chr11 6 CH_egr_895 4 5 0.0000036493
Fragaria x ananassa Fvb3-1 6 CH_fan_420 5 16 0.000000788158
Gossypium hirsutum A04 6 CH_ghi_330 5 6 0.000000000895373
Glycine max Gm06 6 CH_gma_18 17 61 7.02866e-31
Glycine max Gm12 6 CH_gma_35 9 9 5.19956e-22
Gossypium raimondii Chr09 6 CH_gra_29 12 16 3.11118e-28
Helianthus annuus HanXRQChr17 6 CH_han_16 12 12 2.91763e-30
Helianthus annuus HanXRQChr02 6 CH_han_313 5 6 0.00000000211608
Hydrangea macrophylla Hma1.2p1_0155F.1 6 CH_hma_48 5 5 0.0000000000485601
Hydrangea macrophylla Hma1.2p1_0178F.1 6 CH_hma_63 8 79 0.00000000118941
Lupinus albus Lalb_Chr01 6 CH_lal_361 3 3 0.0000225426
Lotus japonicus chr3 6 CH_lja_26 8 11 3.05003e-17
Lotus japonicus chr6 6 CH_lja_261 4 6 0.0000013507
Lotus japonicus chr3 6 CH_lja_345 6 72 0.0000200177
Magnolia biondii Chr07 6 CH_mbi_70 7 10 9.60751e-18
Malus domestica Chr17 6 CH_mdo_177 6 9 0.00000000000666149
Manihot esculenta Chromosome13 6 CH_mes_596 3 4 0.000204291
Medicago truncatula chr2 6 CH_mtr_371 7 41 0.000000000712769
Medicago truncatula chr4 6 CH_mtr_489 7 67 0.00000002702
Oryza sativa ssp. japonica chr09 6 CH_osa_94 6 8 0.000000000000234323
Pisum sativum chr4LG4 6 CH_psa_400 3 6 0.000037114
Populus trichocarpa Chr04 6 CH_ptr_28 11 12 1.49367e-27
Rosa chinensis RcHm_v2.0_Chr2 6 CH_rch_307 9 80 0.0000000000209872
Rosa chinensis RcHm_v2.0_Chr1 6 CH_rch_720 4 6 0.00000120753
Sequoiadendron giganteum chr6 6 CH_sgi_1543 3 6 0.0000323708
Solanum lycopersicum SL4.0ch02 6 CH_sly_114 8 36 0.000000000000083039
Schrenkiella parvula ch1-1 6 CH_spa_197 3 3 0.0000241772
Schrenkiella parvula ch3-1 6 CH_spa_198 3 3 0.0000241772
Theobroma cacao Chromosome_6 6 CH_tca_250 6 33 0.00000000914542
Tripterygium wilfordii NC_052233.1 6 CH_twi_103 5 6 0.000000000369539
Tripterygium wilfordii NC_052252.1 6 CH_twi_330 4 13 0.0000412798
Tripterygium wilfordii NC_052240.1 6 CH_twi_332 3 4 0.0000535236
Utricularia gibba unitig_699 6 CH_ugi_1 13 15 2.19542e-32
Utricularia gibba unitig_578 6 CH_ugi_107 5 38 0.0000534791
Vigna mungo CM024076.1 6 CH_vmu_100 6 21 0.00000000100182
Vanilla planifolia CM028150.1 6 CH_vpl_255 3 3 0.00000556883
Zea mays 6 6 CH_zma_532 3 5 0.000865026
Zea mays 9 6 CH_zma_86 5 5 0.000000000133252

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001