Functional clusters
Information
- Type InterPro
- Description Papain-like cysteine endopeptidase
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Aethionema arabicum | LG-8 | 5 | CH_aar_245 | 3 | 3 | 0.000028717 |
| Aethionema arabicum | LG-9 | 5 | CH_aar_296 | 4 | 20 | 0.000137838 |
| Arabidopsis lyrata | scaffold_1 | 5 | CH_aly_470 | 3 | 4 | 0.000106055 |
| Aquilegia oxysepala | CHR02 | 5 | CH_aox_301 | 3 | 3 | 0.0000352545 |
| Arachis hypogaea | arahy.Tifrunner.gnm1.Arahy.13 | 5 | CH_arhy_840 | 3 | 3 | 0.000023254 |
| Arachis hypogaea | arahy.Tifrunner.gnm1.Arahy.03 | 5 | CH_arhy_841 | 3 | 3 | 0.000023254 |
| Arabidopsis thaliana | Chr1 | 5 | CH_ath_657 | 3 | 12 | 0.00098711 |
| Brassica carinata | ChrC09 | 5 | CH_bca_1344 | 3 | 3 | 0.0000726527 |
| Brassica carinata | ChrC05 | 5 | CH_bca_750 | 4 | 6 | 0.000000977036 |
| Brassica oleracea | C1 | 5 | CH_bol_591 | 3 | 4 | 0.0000972571 |
| Beta vulgaris | Chr8_EL10_PGA_scaffold4 | 5 | CH_bvu_269 | 3 | 3 | 0.00000699185 |
| Corylus avellana | 2 | 5 | CH_cav_106 | 8 | 51 | 0.00000000000474518 |
| Coffea canephora | chr6 | 5 | CH_ccan_70 | 5 | 39 | 0.000000000047754 |
| Citrus clementina | scaffold_2 | 5 | CH_ccl_491 | 3 | 3 | 0.0000550732 |
| Citrus clementina | scaffold_9 | 5 | CH_ccl_743 | 3 | 5 | 0.000549671 |
| Capsella rubella | scaffold_1 | 5 | CH_cru_617 | 3 | 5 | 0.000523891 |
| Cucumis sativus L. | chr4 | 5 | CH_csa_244 | 4 | 12 | 0.00000333398 |
| Davidia involucrata | GWHABJS00000020 | 5 | CH_din_108 | 8 | 46 | 0.00000000000148765 |
| Davidia involucrata | GWHABJS00000001 | 5 | CH_din_78 | 9 | 53 | 0.0000000000000129903 |
| Erigeron canadensis | Conyza_canadensis_scaffold:7 | 5 | CH_eca_281 | 4 | 7 | 0.000000193992 |
| Erigeron canadensis | Conyza_canadensis_scaffold:3 | 5 | CH_eca_48 | 7 | 17 | 0.000000000000014744 |
| Eucalyptus grandis | Chr05 | 5 | CH_egr_1247 | 3 | 3 | 0.000346967 |
| Eucalyptus grandis | Chr03 | 5 | CH_egr_233 | 8 | 9 | 1.12385e-16 |
| Eucalyptus grandis | Chr04 | 5 | CH_egr_30 | 18 | 25 | 2.47272e-39 |
| Eucalyptus grandis | Chr11 | 5 | CH_egr_895 | 4 | 5 | 0.0000036493 |
| Gossypium hirsutum | A04 | 5 | CH_ghi_330 | 5 | 6 | 0.000000000895373 |
| Glycine max | Gm06 | 5 | CH_gma_18 | 17 | 61 | 7.02866e-31 |
| Glycine max | Gm12 | 5 | CH_gma_35 | 9 | 9 | 5.19956e-22 |
| Gossypium raimondii | Chr09 | 5 | CH_gra_29 | 12 | 16 | 3.11118e-28 |
| Helianthus annuus | HanXRQChr17 | 5 | CH_han_16 | 12 | 12 | 2.91763e-30 |
| Helianthus annuus | HanXRQChr02 | 5 | CH_han_313 | 5 | 6 | 0.00000000211608 |
| Hydrangea macrophylla | Hma1.2p1_0155F.1 | 5 | CH_hma_48 | 5 | 5 | 0.0000000000485601 |
| Hydrangea macrophylla | Hma1.2p1_0178F.1 | 5 | CH_hma_63 | 8 | 79 | 0.00000000118941 |
| Lupinus albus | Lalb_Chr01 | 5 | CH_lal_361 | 3 | 3 | 0.0000225426 |
| Lotus japonicus | chr3 | 5 | CH_lja_26 | 8 | 11 | 3.05003e-17 |
| Lotus japonicus | chr6 | 5 | CH_lja_261 | 4 | 6 | 0.0000013507 |
| Lotus japonicus | chr3 | 5 | CH_lja_345 | 6 | 72 | 0.0000200177 |
| Magnolia biondii | Chr07 | 5 | CH_mbi_70 | 7 | 10 | 9.60751e-18 |
| Malus domestica | Chr17 | 5 | CH_mdo_177 | 6 | 9 | 0.00000000000666149 |
| Manihot esculenta | Chromosome13 | 5 | CH_mes_596 | 3 | 4 | 0.000204291 |
| Medicago truncatula | chr2 | 5 | CH_mtr_371 | 7 | 41 | 0.000000000712769 |
| Medicago truncatula | chr4 | 5 | CH_mtr_489 | 7 | 67 | 0.00000002702 |
| Oryza sativa ssp. japonica | chr09 | 5 | CH_osa_94 | 6 | 8 | 0.000000000000234323 |
| Pisum sativum | chr4LG4 | 5 | CH_psa_400 | 3 | 6 | 0.000037114 |
| Populus trichocarpa | Chr04 | 5 | CH_ptr_28 | 11 | 12 | 1.49367e-27 |
| Rosa chinensis | RcHm_v2.0_Chr2 | 5 | CH_rch_307 | 9 | 80 | 0.0000000000209872 |
| Rosa chinensis | RcHm_v2.0_Chr1 | 5 | CH_rch_720 | 4 | 6 | 0.00000120753 |
| Sequoiadendron giganteum | chr6 | 5 | CH_sgi_1543 | 3 | 6 | 0.0000323708 |
| Solanum lycopersicum | SL4.0ch02 | 5 | CH_sly_114 | 8 | 36 | 0.000000000000083039 |
| Schrenkiella parvula | ch1-1 | 5 | CH_spa_197 | 3 | 3 | 0.0000241772 |
| Schrenkiella parvula | ch3-1 | 5 | CH_spa_198 | 3 | 3 | 0.0000241772 |
| Theobroma cacao | Chromosome_6 | 5 | CH_tca_250 | 6 | 33 | 0.00000000914542 |
| Tripterygium wilfordii | NC_052233.1 | 5 | CH_twi_103 | 5 | 6 | 0.000000000369539 |
| Tripterygium wilfordii | NC_052252.1 | 5 | CH_twi_330 | 4 | 13 | 0.0000412798 |
| Tripterygium wilfordii | NC_052240.1 | 5 | CH_twi_332 | 3 | 4 | 0.0000535236 |
| Utricularia gibba | unitig_699 | 5 | CH_ugi_1 | 13 | 15 | 2.19542e-32 |
| Utricularia gibba | unitig_578 | 5 | CH_ugi_107 | 5 | 38 | 0.0000534791 |
| Vigna mungo | CM024076.1 | 5 | CH_vmu_100 | 6 | 21 | 0.00000000100182 |
| Vanilla planifolia | CM028150.1 | 5 | CH_vpl_255 | 3 | 3 | 0.00000556883 |
| Zea mays | 6 | 5 | CH_zma_532 | 3 | 5 | 0.000865026 |
| Zea mays | 9 | 5 | CH_zma_86 | 5 | 5 | 0.000000000133252 |
| Aethionema arabicum | LG-8 | 6 | CH_aar_245 | 3 | 3 | 0.000028717 |
| Aethionema arabicum | LG-9 | 6 | CH_aar_296 | 4 | 20 | 0.000137838 |
| Arabidopsis lyrata | scaffold_1 | 6 | CH_aly_470 | 3 | 4 | 0.000106055 |
| Aquilegia oxysepala | CHR02 | 6 | CH_aox_301 | 3 | 3 | 0.0000352545 |
| Arachis hypogaea | arahy.Tifrunner.gnm1.Arahy.13 | 6 | CH_arhy_840 | 3 | 3 | 0.000023254 |
| Arachis hypogaea | arahy.Tifrunner.gnm1.Arahy.03 | 6 | CH_arhy_841 | 3 | 3 | 0.000023254 |
| Arabidopsis thaliana | Chr1 | 6 | CH_ath_657 | 3 | 12 | 0.00098711 |
| Brassica carinata | ChrC09 | 6 | CH_bca_1344 | 3 | 3 | 0.0000726527 |
| Brassica carinata | ChrC05 | 6 | CH_bca_750 | 4 | 6 | 0.000000977036 |
| Brassica oleracea | C1 | 6 | CH_bol_591 | 3 | 4 | 0.0000972571 |
| Beta vulgaris | Chr8_EL10_PGA_scaffold4 | 6 | CH_bvu_269 | 3 | 3 | 0.00000699185 |
| Corylus avellana | 2 | 6 | CH_cav_106 | 8 | 51 | 0.00000000000474518 |
| Coffea canephora | chr6 | 6 | CH_ccan_70 | 5 | 39 | 0.000000000047754 |
| Citrus clementina | scaffold_2 | 6 | CH_ccl_491 | 3 | 3 | 0.0000550732 |
| Citrus clementina | scaffold_9 | 6 | CH_ccl_743 | 3 | 5 | 0.000549671 |
| Capsella rubella | scaffold_1 | 6 | CH_cru_617 | 3 | 5 | 0.000523891 |
| Cucumis sativus L. | chr4 | 6 | CH_csa_244 | 4 | 12 | 0.00000333398 |
| Davidia involucrata | GWHABJS00000020 | 6 | CH_din_108 | 8 | 46 | 0.00000000000148765 |
| Davidia involucrata | GWHABJS00000001 | 6 | CH_din_78 | 9 | 53 | 0.0000000000000129903 |
| Erigeron canadensis | Conyza_canadensis_scaffold:7 | 6 | CH_eca_281 | 4 | 7 | 0.000000193992 |
| Erigeron canadensis | Conyza_canadensis_scaffold:3 | 6 | CH_eca_48 | 7 | 17 | 0.000000000000014744 |
| Eucalyptus grandis | Chr05 | 6 | CH_egr_1247 | 3 | 3 | 0.000346967 |
| Eucalyptus grandis | Chr03 | 6 | CH_egr_233 | 8 | 9 | 1.12385e-16 |
| Eucalyptus grandis | Chr04 | 6 | CH_egr_30 | 18 | 25 | 2.47272e-39 |
| Eucalyptus grandis | Chr11 | 6 | CH_egr_895 | 4 | 5 | 0.0000036493 |
| Fragaria x ananassa | Fvb3-1 | 6 | CH_fan_420 | 5 | 16 | 0.000000788158 |
| Gossypium hirsutum | A04 | 6 | CH_ghi_330 | 5 | 6 | 0.000000000895373 |
| Glycine max | Gm06 | 6 | CH_gma_18 | 17 | 61 | 7.02866e-31 |
| Glycine max | Gm12 | 6 | CH_gma_35 | 9 | 9 | 5.19956e-22 |
| Gossypium raimondii | Chr09 | 6 | CH_gra_29 | 12 | 16 | 3.11118e-28 |
| Helianthus annuus | HanXRQChr17 | 6 | CH_han_16 | 12 | 12 | 2.91763e-30 |
| Helianthus annuus | HanXRQChr02 | 6 | CH_han_313 | 5 | 6 | 0.00000000211608 |
| Hydrangea macrophylla | Hma1.2p1_0155F.1 | 6 | CH_hma_48 | 5 | 5 | 0.0000000000485601 |
| Hydrangea macrophylla | Hma1.2p1_0178F.1 | 6 | CH_hma_63 | 8 | 79 | 0.00000000118941 |
| Lupinus albus | Lalb_Chr01 | 6 | CH_lal_361 | 3 | 3 | 0.0000225426 |
| Lotus japonicus | chr3 | 6 | CH_lja_26 | 8 | 11 | 3.05003e-17 |
| Lotus japonicus | chr6 | 6 | CH_lja_261 | 4 | 6 | 0.0000013507 |
| Lotus japonicus | chr3 | 6 | CH_lja_345 | 6 | 72 | 0.0000200177 |
| Magnolia biondii | Chr07 | 6 | CH_mbi_70 | 7 | 10 | 9.60751e-18 |
| Malus domestica | Chr17 | 6 | CH_mdo_177 | 6 | 9 | 0.00000000000666149 |
| Manihot esculenta | Chromosome13 | 6 | CH_mes_596 | 3 | 4 | 0.000204291 |
| Medicago truncatula | chr2 | 6 | CH_mtr_371 | 7 | 41 | 0.000000000712769 |
| Medicago truncatula | chr4 | 6 | CH_mtr_489 | 7 | 67 | 0.00000002702 |
| Oryza sativa ssp. japonica | chr09 | 6 | CH_osa_94 | 6 | 8 | 0.000000000000234323 |
| Pisum sativum | chr4LG4 | 6 | CH_psa_400 | 3 | 6 | 0.000037114 |
| Populus trichocarpa | Chr04 | 6 | CH_ptr_28 | 11 | 12 | 1.49367e-27 |
| Rosa chinensis | RcHm_v2.0_Chr2 | 6 | CH_rch_307 | 9 | 80 | 0.0000000000209872 |
| Rosa chinensis | RcHm_v2.0_Chr1 | 6 | CH_rch_720 | 4 | 6 | 0.00000120753 |
| Sequoiadendron giganteum | chr6 | 6 | CH_sgi_1543 | 3 | 6 | 0.0000323708 |
| Solanum lycopersicum | SL4.0ch02 | 6 | CH_sly_114 | 8 | 36 | 0.000000000000083039 |
| Schrenkiella parvula | ch1-1 | 6 | CH_spa_197 | 3 | 3 | 0.0000241772 |
| Schrenkiella parvula | ch3-1 | 6 | CH_spa_198 | 3 | 3 | 0.0000241772 |
| Theobroma cacao | Chromosome_6 | 6 | CH_tca_250 | 6 | 33 | 0.00000000914542 |
| Tripterygium wilfordii | NC_052233.1 | 6 | CH_twi_103 | 5 | 6 | 0.000000000369539 |
| Tripterygium wilfordii | NC_052252.1 | 6 | CH_twi_330 | 4 | 13 | 0.0000412798 |
| Tripterygium wilfordii | NC_052240.1 | 6 | CH_twi_332 | 3 | 4 | 0.0000535236 |
| Utricularia gibba | unitig_699 | 6 | CH_ugi_1 | 13 | 15 | 2.19542e-32 |
| Utricularia gibba | unitig_578 | 6 | CH_ugi_107 | 5 | 38 | 0.0000534791 |
| Vigna mungo | CM024076.1 | 6 | CH_vmu_100 | 6 | 21 | 0.00000000100182 |
| Vanilla planifolia | CM028150.1 | 6 | CH_vpl_255 | 3 | 3 | 0.00000556883 |
| Zea mays | 6 | 6 | CH_zma_532 | 3 | 5 | 0.000865026 |
| Zea mays | 9 | 6 | CH_zma_86 | 5 | 5 | 0.000000000133252 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |