Functional clusters
Information
- Type InterPro
- Description Cyclin
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Brassica napus | C06 | 5 | CH_bna_650 | 5 | 18 | 0.00000207332 |
| Cannabis sativa | NC_044373.1 | 5 | CH_cansat_421 | 3 | 4 | 0.000128227 |
| Capsicum annuum | PGAv.1.6.scaffold724 | 5 | CH_can_614 | 3 | 3 | 0.000135581 |
| Cicer arietinum L. | Ca_LG5_v3 | 5 | CH_car_415 | 4 | 30 | 0.00090135 |
| Carpinus fangiana | Cfa07 | 5 | CH_cfa_243 | 4 | 5 | 0.000000204871 |
| Glycine max | Gm04 | 5 | CH_gma_188 | 5 | 5 | 0.000000000374243 |
| Lupinus albus | Lalb_Chr24 | 5 | CH_lal_560 | 5 | 34 | 0.000212178 |
| Magnolia biondii | Chr13 | 5 | CH_mbi_111 | 7 | 14 | 0.0000000000000150951 |
| Physcomitrium patens | Chr02 | 5 | CH_ppa_70 | 4 | 14 | 0.0000012533 |
| Physcomitrium patens | Chr01 | 5 | CH_ppa_87 | 3 | 3 | 0.00000315374 |
| Quercus lobata | CM012294 | 5 | CH_qlo_778 | 4 | 4 | 0.0000000803399 |
| Solanum lycopersicum | SL4.0ch04 | 5 | CH_sly_309 | 7 | 63 | 0.000000105637 |
| Solanum lycopersicum | SL4.0ch02 | 5 | CH_sly_771 | 4 | 17 | 0.000254074 |
| Solanum pennellii | Spenn-ch04 | 5 | CH_spe_214 | 7 | 63 | 0.00000000875312 |
| Solanum tuberosum | ST4.03ch04 | 5 | CH_stu_192 | 5 | 5 | 0.0000000000632016 |
| Theobroma cacao | Chromosome_8 | 5 | CH_tca_406 | 4 | 8 | 0.00000336421 |
| Trifolium pratense | Tp57577_TGAC_v2_LG7 | 5 | CH_tpr_223 | 4 | 4 | 0.000000131793 |
| Trifolium pratense | Tp57577_TGAC_v2_LG3 | 5 | CH_tpr_25 | 8 | 10 | 1.92601e-17 |
| Trifolium pratense | Tp57577_TGAC_v2_LG2 | 5 | CH_tpr_523 | 3 | 3 | 0.0000916276 |
| Brassica napus | C06 | 6 | CH_bna_650 | 5 | 18 | 0.00000207332 |
| Cannabis sativa | NC_044373.1 | 6 | CH_cansat_421 | 3 | 4 | 0.000128227 |
| Capsicum annuum | PGAv.1.6.scaffold724 | 6 | CH_can_614 | 3 | 3 | 0.000135581 |
| Cicer arietinum L. | Ca_LG5_v3 | 6 | CH_car_415 | 4 | 30 | 0.00090135 |
| Carpinus fangiana | Cfa07 | 6 | CH_cfa_243 | 4 | 5 | 0.000000204871 |
| Glycine max | Gm04 | 6 | CH_gma_188 | 5 | 5 | 0.000000000374243 |
| Lupinus albus | Lalb_Chr24 | 6 | CH_lal_560 | 5 | 34 | 0.000212178 |
| Magnolia biondii | Chr13 | 6 | CH_mbi_111 | 7 | 14 | 0.0000000000000150951 |
| Physcomitrium patens | Chr02 | 6 | CH_ppa_70 | 4 | 14 | 0.0000012533 |
| Physcomitrium patens | Chr01 | 6 | CH_ppa_87 | 3 | 3 | 0.00000315374 |
| Quercus lobata | CM012294 | 6 | CH_qlo_778 | 4 | 4 | 0.0000000803399 |
| Solanum lycopersicum | SL4.0ch04 | 6 | CH_sly_309 | 7 | 63 | 0.000000105637 |
| Solanum lycopersicum | SL4.0ch02 | 6 | CH_sly_771 | 4 | 17 | 0.000254074 |
| Solanum pennellii | Spenn-ch04 | 6 | CH_spe_214 | 7 | 63 | 0.00000000875312 |
| Solanum tuberosum | ST4.03ch04 | 6 | CH_stu_192 | 5 | 5 | 0.0000000000632016 |
| Theobroma cacao | Chromosome_8 | 6 | CH_tca_406 | 4 | 8 | 0.00000336421 |
| Trifolium pratense | Tp57577_TGAC_v2_LG7 | 6 | CH_tpr_223 | 4 | 4 | 0.000000131793 |
| Trifolium pratense | Tp57577_TGAC_v2_LG3 | 6 | CH_tpr_25 | 8 | 10 | 1.92601e-17 |
| Trifolium pratense | Tp57577_TGAC_v2_LG2 | 6 | CH_tpr_523 | 3 | 3 | 0.0000916276 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |