Functional clusters
Information
- Type InterPro
- Description 3-oxo-5-alpha-steroid 4-dehydrogenase/very-long-chain enoyl-CoA reductase
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Arachis hypogaea | arahy.Tifrunner.gnm1.Arahy.19 | 5 | CH_arhy_1250 | 2 | 2 | 0.000628705 |
| Arachis hypogaea | arahy.Tifrunner.gnm1.Arahy.09 | 5 | CH_arhy_519 | 3 | 4 | 0.000000188215 |
| Camellia sinensis var. sinensis | Chr1 | 5 | CH_camsi_1358 | 2 | 2 | 0.000458547 |
| Cannabis sativa | NC_044371.1 | 5 | CH_cansat_102 | 5 | 21 | 0.0000000000595134 |
| Coffea canephora | chr2 | 5 | CH_ccan_118 | 3 | 7 | 0.00000000544141 |
| Ceratophyllum demersum | 5 | 5 | CH_cde_117 | 3 | 5 | 0.000000935518 |
| Carpinus fangiana | Cfa04 | 5 | CH_cfa_223 | 3 | 3 | 0.0000000860393 |
| Cucumis sativus L. | chr5 | 5 | CH_csa_185 | 3 | 3 | 0.000000104528 |
| Daucus carota | DCARv2_Chr2 | 5 | CH_dca_39 | 5 | 5 | 0.00000000000000260636 |
| Eucalyptus grandis | Chr07 | 5 | CH_egr_679 | 3 | 3 | 0.0000000513834 |
| Erythranthe guttata | scaffold_6 | 5 | CH_egut_294 | 3 | 3 | 0.000000159065 |
| Fragaria vesca | Fvb2 | 5 | CH_fve_307 | 3 | 3 | 0.0000000520576 |
| Gossypium hirsutum | D10 | 5 | CH_ghi_268 | 4 | 4 | 0.0000000000571719 |
| Glycine max | Gm02 | 5 | CH_gma_885 | 2 | 2 | 0.000569336 |
| Gossypium raimondii | Chr11 | 5 | CH_gra_675 | 2 | 2 | 0.00080416 |
| Lotus japonicus | chr2 | 5 | CH_lja_169 | 3 | 3 | 0.0000000767031 |
| Lonicera japonica | GWHAAZE00000002 | 5 | CH_lonja_1174 | 2 | 2 | 0.000598874 |
| Magnolia biondii | Chr11 | 5 | CH_mbi_173 | 4 | 4 | 0.0000000000120287 |
| Medicago truncatula | chr6 | 5 | CH_mtr_361 | 4 | 8 | 0.000000000509665 |
| Petunia axillaris | Peaxi162Scf00330 | 5 | CH_pax_711 | 2 | 2 | 0.000703556 |
| Petunia axillaris | Peaxi162Scf00120 | 5 | CH_pax_712 | 2 | 2 | 0.000703556 |
| Punica granatum | NC_045128.1 | 5 | CH_pgr_622 | 2 | 2 | 0.000750356 |
| Physcomitrium patens | Chr16 | 5 | CH_ppa_428 | 2 | 2 | 0.000919089 |
| Prunus persica | Pp02 | 5 | CH_ppe_370 | 3 | 4 | 0.000000333857 |
| Populus trichocarpa | Chr10 | 5 | CH_ptr_372 | 3 | 3 | 0.000000826885 |
| Populus trichocarpa | Chr08 | 5 | CH_ptr_373 | 3 | 3 | 0.000000826885 |
| Phaseolus vulgaris | Chr04 | 5 | CH_pvu_623 | 2 | 2 | 0.000440836 |
| Rosa chinensis | RcHm_v2.0_Chr6 | 5 | CH_rch_493 | 3 | 3 | 0.0000000238391 |
| Rhododendron simsii | chr09 | 5 | CH_rsi_142 | 5 | 5 | 0.00000000000000728449 |
| Sequoiadendron giganteum | HRSCAF_1 | 5 | CH_sgi_579 | 4 | 4 | 0.0000000000121398 |
| Solanum pennellii | Spenn-ch11 | 5 | CH_spe_805 | 2 | 2 | 0.00044479 |
| Trochodendron aralioides | group1 | 5 | CH_tar_906 | 2 | 2 | 0.000600366 |
| Theobroma cacao | Chromosome_10 | 5 | CH_tca_203 | 4 | 6 | 0.000000000618643 |
| Trifolium pratense | Tp57577_TGAC_v2_LG4 | 5 | CH_tpr_740 | 2 | 3 | 0.000681233 |
| Vaccinium macrocarpon | chr8_Vaccinium_macrocarpon_Stevens_v1 | 5 | CH_vma_118 | 4 | 5 | 0.000000000421243 |
| Vigna mungo | CM024077.1 | 5 | CH_vmu_155 | 3 | 3 | 0.0000000626267 |
| Zea mays | 7 | 5 | CH_zma_451 | 2 | 2 | 0.000306788 |
| Arachis hypogaea | arahy.Tifrunner.gnm1.Arahy.19 | 6 | CH_arhy_1250 | 2 | 2 | 0.000628705 |
| Arachis hypogaea | arahy.Tifrunner.gnm1.Arahy.09 | 6 | CH_arhy_519 | 3 | 4 | 0.000000188215 |
| Camellia sinensis var. sinensis | Chr1 | 6 | CH_camsi_1358 | 2 | 2 | 0.000458547 |
| Cannabis sativa | NC_044371.1 | 6 | CH_cansat_102 | 5 | 21 | 0.0000000000595134 |
| Coffea canephora | chr2 | 6 | CH_ccan_118 | 3 | 7 | 0.00000000544141 |
| Ceratophyllum demersum | 5 | 6 | CH_cde_117 | 3 | 5 | 0.000000935518 |
| Carpinus fangiana | Cfa04 | 6 | CH_cfa_223 | 3 | 3 | 0.0000000860393 |
| Cucumis melo | chr10 | 6 | CH_cme_92 | 4 | 5 | 0.0000000000668011 |
| Cucumis sativus L. | chr5 | 6 | CH_csa_185 | 3 | 3 | 0.000000104528 |
| Daucus carota | DCARv2_Chr2 | 6 | CH_dca_39 | 5 | 5 | 0.00000000000000260636 |
| Eucalyptus grandis | Chr07 | 6 | CH_egr_679 | 3 | 3 | 0.0000000513834 |
| Erythranthe guttata | scaffold_6 | 6 | CH_egut_294 | 3 | 3 | 0.000000159065 |
| Fragaria x ananassa | Fvb2-2 | 6 | CH_fan_1182 | 2 | 2 | 0.00066613 |
| Fragaria vesca | Fvb2 | 6 | CH_fve_307 | 3 | 3 | 0.0000000520576 |
| Gossypium hirsutum | D10 | 6 | CH_ghi_268 | 4 | 4 | 0.0000000000571719 |
| Glycine max | Gm02 | 6 | CH_gma_885 | 2 | 2 | 0.000569336 |
| Gossypium raimondii | Chr11 | 6 | CH_gra_675 | 2 | 2 | 0.00080416 |
| Lotus japonicus | chr2 | 6 | CH_lja_169 | 3 | 3 | 0.0000000767031 |
| Lonicera japonica | GWHAAZE00000002 | 6 | CH_lonja_1174 | 2 | 2 | 0.000598874 |
| Magnolia biondii | Chr11 | 6 | CH_mbi_173 | 4 | 4 | 0.0000000000120287 |
| Medicago truncatula | chr6 | 6 | CH_mtr_361 | 4 | 8 | 0.000000000509665 |
| Petunia axillaris | Peaxi162Scf00330 | 6 | CH_pax_711 | 2 | 2 | 0.000703556 |
| Petunia axillaris | Peaxi162Scf00120 | 6 | CH_pax_712 | 2 | 2 | 0.000703556 |
| Punica granatum | NC_045128.1 | 6 | CH_pgr_622 | 2 | 2 | 0.000750356 |
| Physcomitrium patens | Chr16 | 6 | CH_ppa_428 | 2 | 2 | 0.000919089 |
| Prunus persica | Pp02 | 6 | CH_ppe_370 | 3 | 4 | 0.000000333857 |
| Populus trichocarpa | Chr10 | 6 | CH_ptr_372 | 3 | 3 | 0.000000826885 |
| Populus trichocarpa | Chr08 | 6 | CH_ptr_373 | 3 | 3 | 0.000000826885 |
| Phaseolus vulgaris | Chr04 | 6 | CH_pvu_623 | 2 | 2 | 0.000440836 |
| Rosa chinensis | RcHm_v2.0_Chr6 | 6 | CH_rch_493 | 3 | 3 | 0.0000000238391 |
| Rhododendron simsii | chr09 | 6 | CH_rsi_142 | 5 | 5 | 0.00000000000000728449 |
| Sequoiadendron giganteum | HRSCAF_1 | 6 | CH_sgi_579 | 4 | 4 | 0.0000000000121398 |
| Solanum pennellii | Spenn-ch11 | 6 | CH_spe_805 | 2 | 2 | 0.00044479 |
| Trochodendron aralioides | group1 | 6 | CH_tar_906 | 2 | 2 | 0.000600366 |
| Theobroma cacao | Chromosome_10 | 6 | CH_tca_203 | 4 | 6 | 0.000000000618643 |
| Trifolium pratense | Tp57577_TGAC_v2_LG4 | 6 | CH_tpr_740 | 2 | 3 | 0.000681233 |
| Vaccinium macrocarpon | chr8_Vaccinium_macrocarpon_Stevens_v1 | 6 | CH_vma_118 | 4 | 5 | 0.000000000421243 |
| Vigna mungo | CM024077.1 | 6 | CH_vmu_155 | 3 | 3 | 0.0000000626267 |
| Zea mays | 7 | 6 | CH_zma_451 | 2 | 2 | 0.000306788 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |