Functional clusters
Information
- Type InterPro
- Description Protein PLASTID REDOX INSENSITIVE 2
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Arachis hypogaea | arahy.Tifrunner.gnm1.Arahy.03 | 5 | CH_arhy_1203 | 2 | 4 | 0.000538863 |
| Camellia sinensis var. sinensis | Chr10 | 5 | CH_camsi_323 | 4 | 20 | 0.000000001401 |
| Citrullus lanatus | CG_Chr05 | 5 | CH_cla_326 | 2 | 4 | 0.000532222 |
| Cucumis sativus L. | chr5 | 5 | CH_csa_482 | 2 | 5 | 0.000834655 |
| Durio zibethinus | NW_019168048.1 | 5 | CH_dzi_619 | 2 | 7 | 0.000973213 |
| Lactuca sativa | Lsat_1_v8_lg_3 | 5 | CH_lsa_681 | 2 | 3 | 0.000154198 |
| Magnolia biondii | Chr15 | 5 | CH_mbi_943 | 3 | 64 | 0.000147192 |
| Malus domestica | Chr16 | 5 | CH_mdo_1369 | 2 | 3 | 0.000682551 |
| Medicago truncatula | chr8 | 5 | CH_mtr_1048 | 2 | 3 | 0.000123256 |
| Olea europaea | chr6 | 5 | CH_oeu_158 | 3 | 8 | 0.000000239316 |
| Phaseolus vulgaris | Chr03 | 5 | CH_pvu_581 | 2 | 4 | 0.000440804 |
| Quercus lobata | 3 | 5 | CH_qlo_914 | 3 | 11 | 0.000000659603 |
| Rhododendron simsii | chr12 | 5 | CH_rsi_864 | 2 | 4 | 0.000387159 |
| Sechium edule | LG06 | 5 | CH_sed_435 | 2 | 4 | 0.000428021 |
| Solanum pennellii | Spenn-ch05 | 5 | CH_spe_895 | 2 | 7 | 0.000933956 |
| Arachis hypogaea | arahy.Tifrunner.gnm1.Arahy.03 | 6 | CH_arhy_1203 | 2 | 4 | 0.000538863 |
| Camellia sinensis var. sinensis | Chr10 | 6 | CH_camsi_323 | 4 | 20 | 0.000000001401 |
| Citrullus lanatus | CG_Chr05 | 6 | CH_cla_326 | 2 | 4 | 0.000532222 |
| Cucumis melo | chr10 | 6 | CH_cme_402 | 2 | 4 | 0.00040024 |
| Cucumis sativus L. | chr5 | 6 | CH_csa_482 | 2 | 5 | 0.000834655 |
| Durio zibethinus | NW_019168048.1 | 6 | CH_dzi_619 | 2 | 7 | 0.000973213 |
| Lactuca sativa | Lsat_1_v8_lg_3 | 6 | CH_lsa_681 | 2 | 3 | 0.000154198 |
| Magnolia biondii | Chr15 | 6 | CH_mbi_943 | 3 | 64 | 0.000147192 |
| Malus domestica | Chr16 | 6 | CH_mdo_1369 | 2 | 3 | 0.000682551 |
| Medicago truncatula | chr8 | 6 | CH_mtr_1048 | 2 | 3 | 0.000123256 |
| Olea europaea | chr6 | 6 | CH_oeu_158 | 3 | 8 | 0.000000239316 |
| Phaseolus vulgaris | Chr03 | 6 | CH_pvu_581 | 2 | 4 | 0.000440804 |
| Quercus lobata | 3 | 6 | CH_qlo_914 | 3 | 11 | 0.000000659603 |
| Rhododendron simsii | chr12 | 6 | CH_rsi_864 | 2 | 4 | 0.000387159 |
| Sechium edule | LG06 | 6 | CH_sed_435 | 2 | 4 | 0.000428021 |
| Solanum pennellii | Spenn-ch05 | 6 | CH_spe_895 | 2 | 7 | 0.000933956 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |