Functional clusters
Information
- Type InterPro
- Description Protein SIEVE ELEMENT OCCLUSION
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Aethionema arabicum | LG-1 | 5 | CH_aar_399 | 2 | 2 | 0.000547395 |
| Acer truncatum | chr1 | 5 | CH_acertr_463 | 3 | 7 | 0.000014602 |
| Actinidia chinensis | Lachesis_group11 | 5 | CH_ach_20 | 5 | 5 | 0.0000000000000517293 |
| Avicennia marina | ScioBoG_102834_HRSCAF_103055 | 5 | CH_ama_6 | 5 | 5 | 0.000000000000052241 |
| Amborella trichopoda | AmTr_v1.0_scaffold00166 | 5 | CH_atr_82 | 4 | 5 | 0.00000000000752065 |
| Carpinus fangiana | Cfa03 | 5 | CH_cfa_276 | 4 | 8 | 0.000000966948 |
| Carpinus fangiana | Cfa02 | 5 | CH_cfa_69 | 6 | 6 | 0.00000000000000754834 |
| Eucalyptus grandis | Chr08 | 5 | CH_egr_126 | 9 | 12 | 8.76706e-23 |
| Erythranthe guttata | scaffold_5 | 5 | CH_egut_253 | 3 | 3 | 0.000000031813 |
| Glycine max | Gm10 | 5 | CH_gma_62 | 6 | 6 | 5.24755e-16 |
| Helianthus annuus | HanXRQChr17 | 5 | CH_han_593 | 3 | 4 | 0.00000256208 |
| Lupinus albus | Lalb_Chr02 | 5 | CH_lal_226 | 3 | 3 | 0.000000347064 |
| Malus domestica | Chr13 | 5 | CH_mdo_256 | 4 | 4 | 0.000000000297757 |
| Prunus persica | Pp01 | 5 | CH_ppe_45 | 9 | 14 | 1.36164e-23 |
| Pisum sativum | chr6LG2 | 5 | CH_psa_275 | 3 | 3 | 0.000000673472 |
| Quercus lobata | 3 | 5 | CH_qlo_1179 | 3 | 3 | 0.0000337306 |
| Quercus lobata | 5 | 5 | CH_qlo_169 | 8 | 9 | 1.3554e-19 |
| Quercus lobata | 6 | 5 | CH_qlo_95 | 10 | 12 | 5.76101e-25 |
| Rosa chinensis | RcHm_v2.0_Chr4 | 5 | CH_rch_153 | 7 | 22 | 3.46173e-16 |
| Striga asiatica | scaffold87 | 5 | CH_sas_58 | 3 | 6 | 0.000000469245 |
| Simmondsia chinensis | GWHAASQ00000010 | 5 | CH_sci_180 | 3 | 3 | 0.00000130492 |
| Selenicereus undatus | Scaffold_33676 | 5 | CH_sun_39 | 4 | 5 | 0.000000000725079 |
| Aethionema arabicum | LG-1 | 6 | CH_aar_399 | 2 | 2 | 0.000547395 |
| Acer truncatum | chr1 | 6 | CH_acertr_463 | 3 | 7 | 0.000014602 |
| Actinidia chinensis | Lachesis_group11 | 6 | CH_ach_20 | 5 | 5 | 0.0000000000000517293 |
| Avicennia marina | ScioBoG_102834_HRSCAF_103055 | 6 | CH_ama_6 | 5 | 5 | 0.000000000000052241 |
| Amborella trichopoda | AmTr_v1.0_scaffold00166 | 6 | CH_atr_82 | 4 | 5 | 0.00000000000752065 |
| Carpinus fangiana | Cfa03 | 6 | CH_cfa_276 | 4 | 8 | 0.000000966948 |
| Carpinus fangiana | Cfa02 | 6 | CH_cfa_69 | 6 | 6 | 0.00000000000000754834 |
| Eucalyptus grandis | Chr08 | 6 | CH_egr_126 | 9 | 12 | 8.76706e-23 |
| Erythranthe guttata | scaffold_5 | 6 | CH_egut_253 | 3 | 3 | 0.000000031813 |
| Glycine max | Gm10 | 6 | CH_gma_62 | 6 | 6 | 5.24755e-16 |
| Helianthus annuus | HanXRQChr17 | 6 | CH_han_593 | 3 | 4 | 0.00000256208 |
| Lupinus albus | Lalb_Chr02 | 6 | CH_lal_226 | 3 | 3 | 0.000000347064 |
| Malus domestica | Chr13 | 6 | CH_mdo_256 | 4 | 4 | 0.000000000297757 |
| Prunus persica | Pp01 | 6 | CH_ppe_45 | 9 | 14 | 1.36164e-23 |
| Pisum sativum | chr6LG2 | 6 | CH_psa_275 | 3 | 3 | 0.000000673472 |
| Quercus lobata | 3 | 6 | CH_qlo_1179 | 3 | 3 | 0.0000337306 |
| Quercus lobata | 5 | 6 | CH_qlo_169 | 8 | 9 | 1.3554e-19 |
| Quercus lobata | 6 | 6 | CH_qlo_95 | 10 | 12 | 5.76101e-25 |
| Rosa chinensis | RcHm_v2.0_Chr4 | 6 | CH_rch_153 | 7 | 22 | 3.46173e-16 |
| Striga asiatica | scaffold87 | 6 | CH_sas_58 | 3 | 6 | 0.000000469245 |
| Simmondsia chinensis | GWHAASQ00000010 | 6 | CH_sci_180 | 3 | 3 | 0.00000130492 |
| Selenicereus undatus | Scaffold_33676 | 6 | CH_sun_39 | 4 | 5 | 0.000000000725079 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |