Functional clusters
Information
- Type InterPro
- Description Protein response to low sulfur
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Arabidopsis lyrata | scaffold_6 | 5 | CH_aly_619 | 2 | 2 | 0.000396027 |
| Arabidopsis lyrata | scaffold_5 | 5 | CH_aly_620 | 2 | 2 | 0.000396027 |
| Amaranthus hybridus | AmaHy_arrow1_Scaffold_13 | 5 | CH_amhyb_238 | 2 | 2 | 0.0000841751 |
| Arabidopsis thaliana | Chr3 | 5 | CH_ath_478 | 2 | 2 | 0.000171895 |
| Arabidopsis thaliana | Chr5 | 5 | CH_ath_479 | 2 | 2 | 0.000171895 |
| Brassica carinata | ChrC07 | 5 | CH_bca_536 | 3 | 4 | 0.0000000959568 |
| Brassica oleracea | C8 | 5 | CH_bol_674 | 2 | 2 | 0.000196117 |
| Beta vulgaris | Chr3_EL10_PGA_scaffold7 | 5 | CH_bvu_359 | 2 | 2 | 0.0000827917 |
| Cannabis sativa | NC_044374.1 | 5 | CH_cansat_443 | 2 | 3 | 0.000196986 |
| Capsicum annuum | PGAv.1.6.scaffold303 | 5 | CH_can_718 | 2 | 2 | 0.000247831 |
| Cardamine hirsuta | Chr5 | 5 | CH_chi_640 | 2 | 2 | 0.000207361 |
| Chenopodium quinoa | C_Quinoa_Scaffold_1001 | 5 | CH_cqu_761 | 2 | 2 | 0.000142146 |
| Capsella rubella | scaffold_6 | 5 | CH_cru_605 | 2 | 2 | 0.000438693 |
| Capsella rubella | scaffold_5 | 5 | CH_cru_606 | 2 | 2 | 0.000438693 |
| Eucalyptus grandis | Chr11 | 5 | CH_egr_788 | 4 | 71 | 0.000000583296 |
| Erythranthe guttata | scaffold_6 | 5 | CH_egut_671 | 2 | 2 | 0.000436888 |
| Gossypium hirsutum | A08 | 5 | CH_ghi_1185 | 2 | 3 | 0.000480613 |
| Gossypium hirsutum | D08 | 5 | CH_ghi_973 | 2 | 2 | 0.000160209 |
| Gossypium raimondii | Chr04 | 5 | CH_gra_433 | 2 | 2 | 0.0000536107 |
| Helianthus annuus | HanXRQChr08 | 5 | CH_han_256 | 4 | 10 | 0.000000000181741 |
| Lactuca sativa | Lsat_1_v8_lg_8 | 5 | CH_lsa_709 | 2 | 2 | 0.000154202 |
| Magnolia biondii | Chr04 | 5 | CH_mbi_1161 | 2 | 2 | 0.000485661 |
| Magnolia biondii | Chr12 | 5 | CH_mbi_359 | 3 | 3 | 0.0000000353808 |
| Oryza sativa ssp. japonica | chr10 | 5 | CH_osa_597 | 2 | 2 | 0.000158437 |
| Pisum sativum | chr5LG3 | 5 | CH_psa_467 | 2 | 2 | 0.0000521635 |
| Salvia bowleyana | GWHASIU00000008 | 5 | CH_sbo_556 | 2 | 3 | 0.000136491 |
| Sequoiadendron giganteum | chr7 | 5 | CH_sgi_502 | 4 | 5 | 0.00000000000173422 |
| Solanum lycopersicum | SL4.0ch03 | 5 | CH_sly_264 | 3 | 3 | 0.0000000206706 |
| Schrenkiella parvula | ch5-1 | 5 | CH_spa_336 | 2 | 2 | 0.000472404 |
| Solanum pennellii | Spenn-ch03 | 5 | CH_spe_255 | 3 | 4 | 0.0000000474804 |
| Solanum tuberosum | ST4.03ch03 | 5 | CH_stu_295 | 3 | 3 | 0.0000000157569 |
| Theobroma cacao | Chromosome_3 | 5 | CH_tca_541 | 2 | 2 | 0.0000732386 |
| Tripterygium wilfordii | NC_052251.1 | 5 | CH_twi_352 | 2 | 2 | 0.0000557507 |
| Vaccinium macrocarpon | chr2_Vaccinium_macrocarpon_Stevens_v1 | 5 | CH_vma_492 | 2 | 2 | 0.0000929238 |
| Arabidopsis lyrata | scaffold_6 | 6 | CH_aly_619 | 2 | 2 | 0.000396027 |
| Arabidopsis lyrata | scaffold_5 | 6 | CH_aly_620 | 2 | 2 | 0.000396027 |
| Amaranthus hybridus | AmaHy_arrow1_Scaffold_13 | 6 | CH_amhyb_238 | 2 | 2 | 0.0000841751 |
| Arabidopsis thaliana | Chr3 | 6 | CH_ath_478 | 2 | 2 | 0.000171895 |
| Arabidopsis thaliana | Chr5 | 6 | CH_ath_479 | 2 | 2 | 0.000171895 |
| Brassica carinata | ChrC07 | 6 | CH_bca_536 | 3 | 4 | 0.0000000959568 |
| Brassica oleracea | C8 | 6 | CH_bol_674 | 2 | 2 | 0.000196117 |
| Beta vulgaris | Chr3_EL10_PGA_scaffold7 | 6 | CH_bvu_359 | 2 | 2 | 0.0000827917 |
| Cannabis sativa | NC_044374.1 | 6 | CH_cansat_443 | 2 | 3 | 0.000196986 |
| Capsicum annuum | PGAv.1.6.scaffold303 | 6 | CH_can_718 | 2 | 2 | 0.000247831 |
| Cardamine hirsuta | Chr5 | 6 | CH_chi_640 | 2 | 2 | 0.000207361 |
| Chenopodium quinoa | C_Quinoa_Scaffold_1001 | 6 | CH_cqu_761 | 2 | 2 | 0.000142146 |
| Capsella rubella | scaffold_6 | 6 | CH_cru_605 | 2 | 2 | 0.000438693 |
| Capsella rubella | scaffold_5 | 6 | CH_cru_606 | 2 | 2 | 0.000438693 |
| Eucalyptus grandis | Chr11 | 6 | CH_egr_788 | 4 | 71 | 0.000000583296 |
| Erythranthe guttata | scaffold_6 | 6 | CH_egut_671 | 2 | 2 | 0.000436888 |
| Gossypium hirsutum | A08 | 6 | CH_ghi_1185 | 2 | 3 | 0.000480613 |
| Gossypium hirsutum | D08 | 6 | CH_ghi_973 | 2 | 2 | 0.000160209 |
| Gossypium raimondii | Chr04 | 6 | CH_gra_433 | 2 | 2 | 0.0000536107 |
| Helianthus annuus | HanXRQChr08 | 6 | CH_han_256 | 4 | 10 | 0.000000000181741 |
| Lactuca sativa | Lsat_1_v8_lg_8 | 6 | CH_lsa_709 | 2 | 2 | 0.000154202 |
| Magnolia biondii | Chr04 | 6 | CH_mbi_1161 | 2 | 2 | 0.000485661 |
| Magnolia biondii | Chr12 | 6 | CH_mbi_359 | 3 | 3 | 0.0000000353808 |
| Oryza sativa ssp. japonica | chr10 | 6 | CH_osa_597 | 2 | 2 | 0.000158437 |
| Pisum sativum | chr5LG3 | 6 | CH_psa_467 | 2 | 2 | 0.0000521635 |
| Salvia bowleyana | GWHASIU00000008 | 6 | CH_sbo_556 | 2 | 3 | 0.000136491 |
| Sequoiadendron giganteum | chr7 | 6 | CH_sgi_502 | 4 | 5 | 0.00000000000173422 |
| Solanum lycopersicum | SL4.0ch03 | 6 | CH_sly_264 | 3 | 3 | 0.0000000206706 |
| Schrenkiella parvula | ch5-1 | 6 | CH_spa_336 | 2 | 2 | 0.000472404 |
| Solanum pennellii | Spenn-ch03 | 6 | CH_spe_255 | 3 | 4 | 0.0000000474804 |
| Solanum tuberosum | ST4.03ch03 | 6 | CH_stu_295 | 3 | 3 | 0.0000000157569 |
| Theobroma cacao | Chromosome_3 | 6 | CH_tca_541 | 2 | 2 | 0.0000732386 |
| Tripterygium wilfordii | NC_052251.1 | 6 | CH_twi_352 | 2 | 2 | 0.0000557507 |
| Vaccinium macrocarpon | chr2_Vaccinium_macrocarpon_Stevens_v1 | 6 | CH_vma_492 | 2 | 2 | 0.0000929238 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |