Functional clusters

Information

  • Type InterPro
  • Description Polygalacturonase QRT3-like

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Acer truncatum chr3 5 CH_acertr_912 2 2 0.000422982
Arabidopsis lyrata scaffold_7 5 CH_aly_168 3 3 0.00000000653509
Aquilegia oxysepala CHR01 5 CH_aox_437 2 2 0.000240597
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.20 5 CH_arhy_1249 2 2 0.000628705
Arabidopsis thaliana Chr4 5 CH_ath_377 2 2 0.0000286492
Brassica carinata ChrC09 5 CH_bca_1685 2 2 0.000320646
Brassica carinata ChrC06 5 CH_bca_1686 2 2 0.000320646
Brassica napus C07 5 CH_bna_444 3 3 0.0000000852732
Brassica oleracea C1 5 CH_bol_735 2 2 0.000326861
Brassica oleracea C7 5 CH_bol_736 2 2 0.000326861
Brassica rapa A01 5 CH_bra_531 2 2 0.000429314
Brassica rapa A03 5 CH_bra_532 2 2 0.000429314
Camellia sinensis var. sinensis Chr8 5 CH_camsi_463 3 4 0.0000000504629
Cicer arietinum L. Ca_LG1_v3 5 CH_car_121 3 8 0.00000203471
Coffea canephora chr9 5 CH_ccan_686 2 21 0.000651591
Citrus clementina scaffold_2 5 CH_ccl_730 2 2 0.000492187
Cardamine hirsuta Chr7 5 CH_chi_224 3 4 0.0000000286658
Carya illinoinensis Chr09 5 CH_cil_760 2 2 0.000371897
Carica papaya supercontig_30 5 CH_cpa_123 3 3 0.0000000542279
Capsella rubella scaffold_7 5 CH_cru_470 2 2 0.0000731154
Daucus carota DCARv2_Chr1 5 CH_dca_760 2 2 0.000956663
Daucus carota DCARv2_Chr2 5 CH_dca_761 2 2 0.000956663
Davidia involucrata GWHABJS00000002 5 CH_din_231 3 3 0.0000000375197
Davidia involucrata GWHABJS00000005 5 CH_din_756 2 2 0.000500125
Durio zibethinus NW_019167915.1 5 CH_dzi_494 2 2 0.000278093
Erythranthe guttata scaffold_13 5 CH_egut_514 2 2 0.0000728147
Eutrema salsugineum scaffold_1 5 CH_esa_347 2 2 0.0000761499
Fragaria vesca Fvb3 5 CH_fve_652 2 2 0.00017673
Helianthus annuus HanXRQChr08 5 CH_han_1004 2 2 0.000231857
Lupinus albus Lalb_Chr15 5 CH_lal_716 2 2 0.000524824
Lupinus albus Lalb_Chr18 5 CH_lal_717 2 2 0.000524824
Lactuca sativa Lsat_1_v8_lg_2 5 CH_lsa_708 2 2 0.000154202
Magnolia biondii Chr18 5 CH_mbi_114 7 49 0.0000000000000178386
Magnolia biondii Chr02 5 CH_mbi_468 3 3 0.00000042457
Malus domestica Chr05 5 CH_mdo_1123 2 2 0.000227527
Manihot esculenta Chromosome16 5 CH_mes_691 2 2 0.000610631
Medicago truncatula chr2 5 CH_mtr_1400 2 3 0.000739518
Nelumbo nucifera chr7 5 CH_nnu_488 2 4 0.000288996
Petunia axillaris Peaxi162Scf00199 5 CH_pax_526 2 3 0.00021106
Prunus persica Pp04 5 CH_ppe_810 2 3 0.000671324
Populus trichocarpa Chr03 5 CH_ptr_196 4 9 0.000000000364899
Quercus lobata 4 5 CH_qlo_343 6 28 0.0000000000000881382
Rosa chinensis RcHm_v2.0_Chr5 5 CH_rch_1146 2 2 0.000119596
Rhododendron simsii chr13 5 CH_rsi_694 2 2 0.0000645307
Striga asiatica scaffold175 5 CH_sas_143 2 3 0.0000625371
Salix brachista GWHAAZH00000003 5 CH_sbr_111 4 4 0.00000000000375355
Sapria himalayana scaffold54_3822261 5 CH_shi_364 3 20 0.000111647
Solanum lycopersicum SL4.0ch02 5 CH_sly_619 2 2 0.0000586941
Schrenkiella parvula ch7-4 5 CH_spa_243 2 2 0.000078734
Solanum pennellii Spenn-ch02 5 CH_spe_567 2 2 0.000044479
Solanum tuberosum ST4.03ch02 5 CH_stu_615 2 2 0.0000512453
Trochodendron aralioides group6 5 CH_tar_969 2 2 0.000900549
Theobroma cacao Chromosome_2 5 CH_tca_630 2 2 0.000219716
Tarenaya hassleriana NW_010960187.1 5 CH_tha_265 2 2 0.000209541
Trifolium pratense Tp57577_TGAC_v2_scaf_34 5 CH_tpr_778 2 2 0.000756974
Tripterygium wilfordii NC_052247.1 5 CH_twi_501 2 2 0.000557507
Tripterygium wilfordii NC_052252.1 5 CH_twi_502 2 2 0.000557507
Vanilla planifolia CM028150.1 5 CH_vpl_25 5 5 0.00000000000000134154
Vitis vinifera chr1 5 CH_vvi_624 2 2 0.000228189
Acer truncatum chr3 6 CH_acertr_912 2 2 0.000422982
Arabidopsis lyrata scaffold_7 6 CH_aly_168 3 3 0.00000000653509
Aquilegia oxysepala CHR01 6 CH_aox_437 2 2 0.000240597
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.20 6 CH_arhy_1249 2 2 0.000628705
Arabidopsis thaliana Chr4 6 CH_ath_377 2 2 0.0000286492
Brassica carinata ChrC09 6 CH_bca_1685 2 2 0.000320646
Brassica carinata ChrC06 6 CH_bca_1686 2 2 0.000320646
Brassica napus C07 6 CH_bna_444 3 3 0.0000000852732
Brassica oleracea C1 6 CH_bol_735 2 2 0.000326861
Brassica oleracea C7 6 CH_bol_736 2 2 0.000326861
Brassica rapa A01 6 CH_bra_531 2 2 0.000429314
Brassica rapa A03 6 CH_bra_532 2 2 0.000429314
Camellia sinensis var. sinensis Chr8 6 CH_camsi_463 3 4 0.0000000504629
Cicer arietinum L. Ca_LG1_v3 6 CH_car_121 3 8 0.00000203471
Coffea canephora chr9 6 CH_ccan_686 2 21 0.000651591
Citrus clementina scaffold_2 6 CH_ccl_730 2 2 0.000492187
Cardamine hirsuta Chr7 6 CH_chi_224 3 4 0.0000000286658
Carya illinoinensis Chr09 6 CH_cil_760 2 2 0.000371897
Carica papaya supercontig_30 6 CH_cpa_123 3 3 0.0000000542279
Capsella rubella scaffold_7 6 CH_cru_470 2 2 0.0000731154
Daucus carota DCARv2_Chr1 6 CH_dca_760 2 2 0.000956663
Daucus carota DCARv2_Chr2 6 CH_dca_761 2 2 0.000956663
Davidia involucrata GWHABJS00000002 6 CH_din_231 3 3 0.0000000375197
Davidia involucrata GWHABJS00000005 6 CH_din_756 2 2 0.000500125
Durio zibethinus NW_019167915.1 6 CH_dzi_494 2 2 0.000278093
Erythranthe guttata scaffold_13 6 CH_egut_514 2 2 0.0000728147
Eutrema salsugineum scaffold_1 6 CH_esa_347 2 2 0.0000761499
Fragaria x ananassa Fvb3-1 6 CH_fan_1181 2 2 0.00066613
Fragaria vesca Fvb3 6 CH_fve_652 2 2 0.00017673
Helianthus annuus HanXRQChr08 6 CH_han_1004 2 2 0.000231857
Lupinus albus Lalb_Chr15 6 CH_lal_716 2 2 0.000524824
Lupinus albus Lalb_Chr18 6 CH_lal_717 2 2 0.000524824
Lactuca sativa Lsat_1_v8_lg_2 6 CH_lsa_708 2 2 0.000154202
Magnolia biondii Chr18 6 CH_mbi_114 7 49 0.0000000000000178386
Magnolia biondii Chr02 6 CH_mbi_468 3 3 0.00000042457
Malus domestica Chr05 6 CH_mdo_1123 2 2 0.000227527
Manihot esculenta Chromosome16 6 CH_mes_691 2 2 0.000610631
Medicago truncatula chr2 6 CH_mtr_1400 2 3 0.000739518
Nelumbo nucifera chr7 6 CH_nnu_488 2 4 0.000288996
Petunia axillaris Peaxi162Scf00199 6 CH_pax_526 2 3 0.00021106
Prunus persica Pp04 6 CH_ppe_810 2 3 0.000671324
Populus trichocarpa Chr03 6 CH_ptr_196 4 9 0.000000000364899
Quercus lobata 4 6 CH_qlo_343 6 28 0.0000000000000881382
Rosa chinensis RcHm_v2.0_Chr5 6 CH_rch_1146 2 2 0.000119596
Rhododendron simsii chr13 6 CH_rsi_694 2 2 0.0000645307
Striga asiatica scaffold175 6 CH_sas_143 2 3 0.0000625371
Salix brachista GWHAAZH00000003 6 CH_sbr_111 4 4 0.00000000000375355
Sapria himalayana scaffold54_3822261 6 CH_shi_364 3 20 0.000111647
Solanum lycopersicum SL4.0ch02 6 CH_sly_619 2 2 0.0000586941
Schrenkiella parvula ch7-4 6 CH_spa_243 2 2 0.000078734
Solanum pennellii Spenn-ch02 6 CH_spe_567 2 2 0.000044479
Solanum tuberosum ST4.03ch02 6 CH_stu_615 2 2 0.0000512453
Trochodendron aralioides group6 6 CH_tar_969 2 2 0.000900549
Theobroma cacao Chromosome_2 6 CH_tca_630 2 2 0.000219716
Tarenaya hassleriana NW_010960187.1 6 CH_tha_265 2 2 0.000209541
Trifolium pratense Tp57577_TGAC_v2_scaf_34 6 CH_tpr_778 2 2 0.000756974
Tripterygium wilfordii NC_052247.1 6 CH_twi_501 2 2 0.000557507
Tripterygium wilfordii NC_052252.1 6 CH_twi_502 2 2 0.000557507
Vanilla planifolia CM028150.1 6 CH_vpl_25 5 5 0.00000000000000134154
Vitis vinifera chr1 6 CH_vvi_624 2 2 0.000228189

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001