Functional clusters
Information
- Type InterPro
- Description Putative lipid-transfer protein DIR1-like
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Amaranthus hybridus | AmaHy_arrow1_Scaffold_2 | 5 | CH_amhyb_397 | 2 | 2 | 0.000505051 |
| Arachis hypogaea | arahy.Tifrunner.gnm1.Arahy.19 | 5 | CH_arhy_385 | 4 | 5 | 0.00000000240859 |
| Brassica carinata | ChrC04 | 5 | CH_bca_2084 | 3 | 14 | 0.000909472 |
| Brassica napus | C02 | 5 | CH_bna_1165 | 3 | 7 | 0.00019261 |
| Brassica napus | A10 | 5 | CH_bna_1250 | 3 | 8 | 0.000308091 |
| Brassica napus | A02 | 5 | CH_bna_741 | 3 | 3 | 0.00000550917 |
| Brassica oleracea | C2 | 5 | CH_bol_359 | 3 | 3 | 0.00000182697 |
| Brassica oleracea | C9 | 5 | CH_bol_876 | 3 | 15 | 0.000829031 |
| Brassica rapa | A02 | 5 | CH_bra_234 | 3 | 3 | 0.00000188 |
| Brassica rapa | A10 | 5 | CH_bra_331 | 3 | 6 | 0.0000375722 |
| Beta vulgaris | Chr5_EL10_PGA_scaffold2 | 5 | CH_bvu_60 | 5 | 6 | 0.000000000000266416 |
| Citrus clementina | scaffold_6 | 5 | CH_ccl_374 | 3 | 3 | 0.00000121129 |
| Carpinus fangiana | Cfa01 | 5 | CH_cfa_269 | 3 | 4 | 0.000000688229 |
| Durio zibethinus | NW_019168492.1 | 5 | CH_dzi_53 | 8 | 40 | 8.35014e-16 |
| Eucalyptus grandis | Chr07 | 5 | CH_egr_601 | 4 | 6 | 0.00000000644803 |
| Eutrema salsugineum | scaffold_2 | 5 | CH_esa_214 | 3 | 3 | 0.00000143526 |
| Gossypium hirsutum | A10 | 5 | CH_ghi_466 | 5 | 26 | 0.00000010848 |
| Glycine max | Gm18 | 5 | CH_gma_24 | 9 | 9 | 6.11817e-26 |
| Gossypium raimondii | Chr11 | 5 | CH_gra_549 | 4 | 43 | 0.00027245 |
| Magnolia biondii | Chr19 | 5 | CH_mbi_454 | 3 | 3 | 0.000000297199 |
| Medicago truncatula | chr4 | 5 | CH_mtr_323 | 4 | 4 | 0.000000000103002 |
| Nelumbo nucifera | chr1 | 5 | CH_nnu_241 | 3 | 4 | 0.000000779515 |
| Oryza sativa ssp. japonica | chr07 | 5 | CH_osa_443 | 3 | 9 | 0.0000294953 |
| Punica granatum | NC_045128.1 | 5 | CH_pgr_169 | 4 | 6 | 0.00000000399112 |
| Physcomitrium patens | Chr11 | 5 | CH_ppa_188 | 3 | 4 | 0.0000737528 |
| Physcomitrium patens | Chr11 | 5 | CH_ppa_8 | 7 | 22 | 0.000000000000834417 |
| Prunus persica | Pp02 | 5 | CH_ppe_422 | 3 | 3 | 0.00000183639 |
| Quercus lobata | 8 | 5 | CH_qlo_970 | 3 | 4 | 0.00000134328 |
| Simmondsia chinensis | GWHAASQ00000017 | 5 | CH_sci_23 | 7 | 8 | 7.92374e-20 |
| Vaccinium macrocarpon | chr8_Vaccinium_macrocarpon_Stevens_v1 | 5 | CH_vma_632 | 2 | 2 | 0.000278772 |
| Amaranthus hybridus | AmaHy_arrow1_Scaffold_2 | 6 | CH_amhyb_397 | 2 | 2 | 0.000505051 |
| Arachis hypogaea | arahy.Tifrunner.gnm1.Arahy.19 | 6 | CH_arhy_385 | 4 | 5 | 0.00000000240859 |
| Brassica carinata | ChrC04 | 6 | CH_bca_2084 | 3 | 14 | 0.000909472 |
| Brassica napus | C02 | 6 | CH_bna_1165 | 3 | 7 | 0.00019261 |
| Brassica napus | A10 | 6 | CH_bna_1250 | 3 | 8 | 0.000308091 |
| Brassica napus | A02 | 6 | CH_bna_741 | 3 | 3 | 0.00000550917 |
| Brassica oleracea | C2 | 6 | CH_bol_359 | 3 | 3 | 0.00000182697 |
| Brassica oleracea | C9 | 6 | CH_bol_876 | 3 | 15 | 0.000829031 |
| Brassica rapa | A02 | 6 | CH_bra_234 | 3 | 3 | 0.00000188 |
| Brassica rapa | A10 | 6 | CH_bra_331 | 3 | 6 | 0.0000375722 |
| Beta vulgaris | Chr5_EL10_PGA_scaffold2 | 6 | CH_bvu_60 | 5 | 6 | 0.000000000000266416 |
| Citrus clementina | scaffold_6 | 6 | CH_ccl_374 | 3 | 3 | 0.00000121129 |
| Carpinus fangiana | Cfa01 | 6 | CH_cfa_269 | 3 | 4 | 0.000000688229 |
| Durio zibethinus | NW_019168492.1 | 6 | CH_dzi_53 | 8 | 40 | 8.35014e-16 |
| Eucalyptus grandis | Chr07 | 6 | CH_egr_601 | 4 | 6 | 0.00000000644803 |
| Eutrema salsugineum | scaffold_2 | 6 | CH_esa_214 | 3 | 3 | 0.00000143526 |
| Gossypium hirsutum | A10 | 6 | CH_ghi_466 | 5 | 26 | 0.00000010848 |
| Glycine max | Gm18 | 6 | CH_gma_24 | 9 | 9 | 6.11817e-26 |
| Gossypium raimondii | Chr11 | 6 | CH_gra_549 | 4 | 43 | 0.00027245 |
| Magnolia biondii | Chr19 | 6 | CH_mbi_454 | 3 | 3 | 0.000000297199 |
| Medicago truncatula | chr4 | 6 | CH_mtr_323 | 4 | 4 | 0.000000000103002 |
| Nelumbo nucifera | chr1 | 6 | CH_nnu_241 | 3 | 4 | 0.000000779515 |
| Oryza sativa ssp. japonica | chr07 | 6 | CH_osa_443 | 3 | 9 | 0.0000294953 |
| Punica granatum | NC_045128.1 | 6 | CH_pgr_169 | 4 | 6 | 0.00000000399112 |
| Physcomitrium patens | Chr11 | 6 | CH_ppa_188 | 3 | 4 | 0.0000737528 |
| Physcomitrium patens | Chr11 | 6 | CH_ppa_8 | 7 | 22 | 0.000000000000834417 |
| Prunus persica | Pp02 | 6 | CH_ppe_422 | 3 | 3 | 0.00000183639 |
| Quercus lobata | 8 | 6 | CH_qlo_970 | 3 | 4 | 0.00000134328 |
| Simmondsia chinensis | GWHAASQ00000017 | 6 | CH_sci_23 | 7 | 8 | 7.92374e-20 |
| Vaccinium macrocarpon | chr8_Vaccinium_macrocarpon_Stevens_v1 | 6 | CH_vma_632 | 2 | 2 | 0.000278772 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |