Functional clusters
Information
- Type InterPro
- Description REM family
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Aethionema arabicum | LG-2 | 5 | CH_aar_127 | 4 | 5 | 0.0000000207234 |
| Aethionema arabicum | sc-15 | 5 | CH_aar_67 | 6 | 11 | 0.000000000000525227 |
| Arabidopsis lyrata | scaffold_4 | 5 | CH_aly_37 | 9 | 33 | 1.59355e-17 |
| Arabidopsis lyrata | scaffold_7 | 5 | CH_aly_78 | 6 | 10 | 0.0000000000005965 |
| Aquilegia oxysepala | CHR06 | 5 | CH_aox_436 | 2 | 2 | 0.000240597 |
| Arabidopsis thaliana | Chr4 | 5 | CH_ath_11 | 10 | 14 | 1.80865e-28 |
| Arabidopsis thaliana | Chr2 | 5 | CH_ath_46 | 7 | 23 | 0.00000000000000368204 |
| Brassica carinata | ChrB01 | 5 | CH_bca_290 | 5 | 5 | 0.000000000895642 |
| Brassica carinata | ChrC09 | 5 | CH_bca_312 | 6 | 12 | 0.00000000126371 |
| Brassica carinata | ChrC07 | 5 | CH_bca_481 | 5 | 8 | 0.0000000499616 |
| Brassica napus | C01 | 5 | CH_bna_12 | 11 | 14 | 2.44835e-28 |
| Brassica napus | C07 | 5 | CH_bna_1259 | 3 | 6 | 0.000321114 |
| Brassica napus | C04 | 5 | CH_bna_140 | 6 | 10 | 0.00000000000176856 |
| Brassica napus | C08 | 5 | CH_bna_1414 | 3 | 6 | 0.00064191 |
| Brassica napus | A01 | 5 | CH_bna_453 | 4 | 5 | 0.000000104358 |
| Brassica napus | A04 | 5 | CH_bna_505 | 4 | 6 | 0.000000312912 |
| Brassica napus | C05 | 5 | CH_bna_931 | 3 | 3 | 0.0000321434 |
| Brassica oleracea | C1 | 5 | CH_bol_113 | 5 | 7 | 0.000000000152787 |
| Brassica oleracea | C4 | 5 | CH_bol_26 | 7 | 7 | 2.59152e-18 |
| Brassica oleracea | C8 | 5 | CH_bol_294 | 4 | 7 | 0.000000409807 |
| Brassica rapa | A04 | 5 | CH_bra_136 | 4 | 4 | 0.0000000461925 |
| Brassica rapa | A01 | 5 | CH_bra_541 | 3 | 5 | 0.000477471 |
| Brassica rapa | A09 | 5 | CH_bra_625 | 3 | 6 | 0.00095423 |
| Beta vulgaris | Chr3_EL10_PGA_scaffold7 | 5 | CH_bvu_118 | 4 | 6 | 0.00000000178721 |
| Capsicum annuum | PGAv.1.6.scaffold673 | 5 | CH_can_224 | 4 | 4 | 0.00000000517609 |
| Capsicum annuum | PGAv.1.6.scaffold137 | 5 | CH_can_434 | 4 | 15 | 0.00000702629 |
| Capsicum annuum | PGAv.1.6.scaffold241 | 5 | CH_can_880 | 3 | 10 | 0.000998878 |
| Coffea canephora | chr5 | 5 | CH_ccan_483 | 2 | 2 | 0.000119249 |
| Coffea canephora | chr7 | 5 | CH_ccan_594 | 2 | 3 | 0.000357744 |
| Cardamine hirsuta | Chr4 | 5 | CH_chi_18 | 13 | 40 | 7.44397e-26 |
| Cardamine hirsuta | Chr7 | 5 | CH_chi_41 | 9 | 12 | 4.5515e-21 |
| Chenopodium quinoa | C_Quinoa_Scaffold_4480 | 5 | CH_cqu_423 | 3 | 4 | 0.00000113139 |
| Capsella rubella | scaffold_4 | 5 | CH_cru_26 | 10 | 27 | 4.05777e-21 |
| Capsella rubella | scaffold_7 | 5 | CH_cru_38 | 8 | 12 | 8.52858e-19 |
| Erigeron canadensis | Conyza_canadensis_scaffold:4 | 5 | CH_eca_56 | 5 | 9 | 0.0000000000000804482 |
| Eutrema salsugineum | scaffold_15 | 5 | CH_esa_31 | 8 | 13 | 6.49597e-18 |
| Eutrema salsugineum | scaffold_1 | 5 | CH_esa_55 | 7 | 13 | 0.0000000000000126253 |
| Helianthus annuus | HanXRQChr07 | 5 | CH_han_606 | 3 | 3 | 0.00000297913 |
| Lactuca sativa | Lsat_1_v8_lg_4 | 5 | CH_lsa_304 | 4 | 11 | 0.000000028206 |
| Lactuca sativa | Lsat_1_v8_lg_1 | 5 | CH_lsa_359 | 4 | 16 | 0.000000155444 |
| Medicago truncatula | chr3 | 5 | CH_mtr_114 | 6 | 10 | 3.87266e-18 |
| Nicotiana tabacum | Nitab4.5_0000555 | 5 | CH_nta_8 | 7 | 9 | 1.63342e-18 |
| Nicotiana tabacum | Nitab4.5_0000025 | 5 | CH_nta_81 | 4 | 8 | 0.0000000914366 |
| Petunia axillaris | Peaxi162Scf00192 | 5 | CH_pax_490 | 3 | 6 | 0.000100859 |
| Petunia axillaris | Peaxi162Scf00045 | 5 | CH_pax_55 | 5 | 5 | 0.00000000000113736 |
| Papaver somniferum | NW_020631041.1 | 5 | CH_pso_473 | 3 | 4 | 0.000000106587 |
| Solanum lycopersicum | SL4.0ch08 | 5 | CH_sly_51 | 8 | 12 | 2.40726e-21 |
| Schrenkiella parvula | ch4-2 | 5 | CH_spa_28 | 6 | 10 | 0.000000000000553194 |
| Schrenkiella parvula | ch7-5 | 5 | CH_spa_54 | 5 | 8 | 0.000000000249891 |
| Solanum pennellii | Spenn-ch08 | 5 | CH_spe_10 | 10 | 11 | 2.326e-30 |
| Solanum tuberosum | ST4.03ch08 | 5 | CH_stu_214 | 4 | 5 | 0.000000000254332 |
| Selenicereus undatus | Scaffold_33679 | 5 | CH_sun_341 | 2 | 2 | 0.000435983 |
| Tarenaya hassleriana | NW_010966177.1 | 5 | CH_tha_264 | 2 | 2 | 0.000209541 |
| Aethionema arabicum | LG-2 | 6 | CH_aar_127 | 4 | 5 | 0.0000000207234 |
| Aethionema arabicum | sc-15 | 6 | CH_aar_67 | 6 | 11 | 0.000000000000525227 |
| Arabidopsis lyrata | scaffold_4 | 6 | CH_aly_37 | 9 | 33 | 1.59355e-17 |
| Arabidopsis lyrata | scaffold_7 | 6 | CH_aly_78 | 6 | 10 | 0.0000000000005965 |
| Aquilegia oxysepala | CHR06 | 6 | CH_aox_436 | 2 | 2 | 0.000240597 |
| Arabidopsis thaliana | Chr4 | 6 | CH_ath_11 | 10 | 14 | 1.80865e-28 |
| Arabidopsis thaliana | Chr2 | 6 | CH_ath_46 | 7 | 23 | 0.00000000000000368204 |
| Brassica carinata | ChrB01 | 6 | CH_bca_290 | 5 | 5 | 0.000000000895642 |
| Brassica carinata | ChrC09 | 6 | CH_bca_312 | 6 | 12 | 0.00000000126371 |
| Brassica carinata | ChrC07 | 6 | CH_bca_481 | 5 | 8 | 0.0000000499616 |
| Brassica napus | C01 | 6 | CH_bna_12 | 11 | 14 | 2.44835e-28 |
| Brassica napus | C07 | 6 | CH_bna_1259 | 3 | 6 | 0.000321114 |
| Brassica napus | C04 | 6 | CH_bna_140 | 6 | 10 | 0.00000000000176856 |
| Brassica napus | C08 | 6 | CH_bna_1414 | 3 | 6 | 0.00064191 |
| Brassica napus | A01 | 6 | CH_bna_453 | 4 | 5 | 0.000000104358 |
| Brassica napus | A04 | 6 | CH_bna_505 | 4 | 6 | 0.000000312912 |
| Brassica napus | C05 | 6 | CH_bna_931 | 3 | 3 | 0.0000321434 |
| Brassica oleracea | C1 | 6 | CH_bol_113 | 5 | 7 | 0.000000000152787 |
| Brassica oleracea | C4 | 6 | CH_bol_26 | 7 | 7 | 2.59152e-18 |
| Brassica oleracea | C8 | 6 | CH_bol_294 | 4 | 7 | 0.000000409807 |
| Brassica rapa | A04 | 6 | CH_bra_136 | 4 | 4 | 0.0000000461925 |
| Brassica rapa | A01 | 6 | CH_bra_541 | 3 | 5 | 0.000477471 |
| Brassica rapa | A09 | 6 | CH_bra_625 | 3 | 6 | 0.00095423 |
| Beta vulgaris | Chr3_EL10_PGA_scaffold7 | 6 | CH_bvu_118 | 4 | 6 | 0.00000000178721 |
| Capsicum annuum | PGAv.1.6.scaffold673 | 6 | CH_can_224 | 4 | 4 | 0.00000000517609 |
| Capsicum annuum | PGAv.1.6.scaffold137 | 6 | CH_can_434 | 4 | 15 | 0.00000702629 |
| Capsicum annuum | PGAv.1.6.scaffold241 | 6 | CH_can_880 | 3 | 10 | 0.000998878 |
| Coffea canephora | chr5 | 6 | CH_ccan_483 | 2 | 2 | 0.000119249 |
| Coffea canephora | chr7 | 6 | CH_ccan_594 | 2 | 3 | 0.000357744 |
| Cardamine hirsuta | Chr4 | 6 | CH_chi_18 | 13 | 40 | 7.44397e-26 |
| Cardamine hirsuta | Chr7 | 6 | CH_chi_41 | 9 | 12 | 4.5515e-21 |
| Chenopodium quinoa | C_Quinoa_Scaffold_4480 | 6 | CH_cqu_423 | 3 | 4 | 0.00000113139 |
| Capsella rubella | scaffold_4 | 6 | CH_cru_26 | 10 | 27 | 4.05777e-21 |
| Capsella rubella | scaffold_7 | 6 | CH_cru_38 | 8 | 12 | 8.52858e-19 |
| Erigeron canadensis | Conyza_canadensis_scaffold:4 | 6 | CH_eca_56 | 5 | 9 | 0.0000000000000804482 |
| Eutrema salsugineum | scaffold_15 | 6 | CH_esa_31 | 8 | 13 | 6.49597e-18 |
| Eutrema salsugineum | scaffold_1 | 6 | CH_esa_55 | 7 | 13 | 0.0000000000000126253 |
| Helianthus annuus | HanXRQChr07 | 6 | CH_han_606 | 3 | 3 | 0.00000297913 |
| Lactuca sativa | Lsat_1_v8_lg_4 | 6 | CH_lsa_304 | 4 | 11 | 0.000000028206 |
| Lactuca sativa | Lsat_1_v8_lg_1 | 6 | CH_lsa_359 | 4 | 16 | 0.000000155444 |
| Medicago truncatula | chr3 | 6 | CH_mtr_114 | 6 | 10 | 3.87266e-18 |
| Nicotiana tabacum | Nitab4.5_0000555 | 6 | CH_nta_8 | 7 | 9 | 1.63342e-18 |
| Nicotiana tabacum | Nitab4.5_0000025 | 6 | CH_nta_81 | 4 | 8 | 0.0000000914366 |
| Petunia axillaris | Peaxi162Scf00192 | 6 | CH_pax_490 | 3 | 6 | 0.000100859 |
| Petunia axillaris | Peaxi162Scf00045 | 6 | CH_pax_55 | 5 | 5 | 0.00000000000113736 |
| Papaver somniferum | NW_020631041.1 | 6 | CH_pso_473 | 3 | 4 | 0.000000106587 |
| Solanum lycopersicum | SL4.0ch08 | 6 | CH_sly_51 | 8 | 12 | 2.40726e-21 |
| Schrenkiella parvula | ch4-2 | 6 | CH_spa_28 | 6 | 10 | 0.000000000000553194 |
| Schrenkiella parvula | ch7-5 | 6 | CH_spa_54 | 5 | 8 | 0.000000000249891 |
| Solanum pennellii | Spenn-ch08 | 6 | CH_spe_10 | 10 | 11 | 2.326e-30 |
| Solanum tuberosum | ST4.03ch08 | 6 | CH_stu_214 | 4 | 5 | 0.000000000254332 |
| Selenicereus undatus | Scaffold_33679 | 6 | CH_sun_341 | 2 | 2 | 0.000435983 |
| Tarenaya hassleriana | NW_010966177.1 | 6 | CH_tha_264 | 2 | 2 | 0.000209541 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |