Functional clusters
Information
- Type InterPro
- Description Serine/threonine-protein kinase ATM, plant
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Amborella trichopoda | AmTr_v1.0_scaffold00058 | 5 | CH_atr_185 | 3 | 4 | 0.000000037865 |
| Brassica napus | C03 | 5 | CH_bna_991 | 2 | 2 | 0.000055685 |
| Brassica oleracea | C3 | 5 | CH_bol_518 | 2 | 2 | 0.0000326861 |
| Brassica rapa | A06 | 5 | CH_bra_103 | 3 | 3 | 0.00000000276471 |
| Camellia sinensis var. sinensis | Chr15 | 5 | CH_camsi_233 | 4 | 6 | 0.0000000000216935 |
| Capsicum annuum | PGAv.1.6.scaffold1305 | 5 | CH_can_716 | 2 | 2 | 0.000247831 |
| Cicer arietinum L. | Ca_LG5_v3 | 5 | CH_car_306 | 2 | 2 | 0.00023349 |
| Chara braunii | BFEA01000008 | 5 | CH_cbr_34 | 4 | 8 | 0.0000000000781408 |
| Coffea canephora | chr4 | 5 | CH_ccan_543 | 2 | 22 | 0.000234235 |
| Ceratophyllum demersum | 5 | 5 | CH_cde_242 | 2 | 2 | 0.0000789796 |
| Cardamine hirsuta | Chr5 | 5 | CH_chi_639 | 2 | 2 | 0.000207361 |
| Carica papaya | supercontig_76 | 5 | CH_cpa_139 | 3 | 5 | 0.000000135557 |
| Chenopodium quinoa | C_Quinoa_Scaffold_2689 | 5 | CH_cqu_862 | 2 | 2 | 0.000284293 |
| Chenopodium quinoa | C_Quinoa_Scaffold_3422 | 5 | CH_cqu_863 | 2 | 2 | 0.000284293 |
| Gossypium hirsutum | A09 | 5 | CH_ghi_879 | 2 | 2 | 0.0000801047 |
| Lupinus albus | Lalb_Chr08 | 5 | CH_lal_139 | 3 | 3 | 0.00000000413171 |
| Lonicera japonica | GWHAAZE00000009 | 5 | CH_lonja_233 | 4 | 5 | 0.00000000000322199 |
| Magnolia biondii | Chr10 | 5 | CH_mbi_358 | 3 | 3 | 0.0000000353808 |
| Petunia axillaris | Peaxi162Scf00009 | 5 | CH_pax_457 | 2 | 2 | 0.0000703556 |
| Prasinoderma coloniale | Chr2 | 5 | CH_pco_7 | 2 | 2 | 0.000279135 |
| Quercus lobata | 7 | 5 | CH_qlo_775 | 3 | 3 | 0.0000000799683 |
| Rhododendron simsii | chr02 | 5 | CH_rsi_465 | 3 | 3 | 0.000000524708 |
| Rhododendron simsii | chr06 | 5 | CH_rsi_613 | 3 | 8 | 0.0000293576 |
| Striga asiatica | scaffold90 | 5 | CH_sas_168 | 2 | 3 | 0.000187606 |
| Sequoiadendron giganteum | chr3 | 5 | CH_sgi_46 | 11 | 15 | 4.00924e-36 |
| Sapria himalayana | scaffold19_10581841 | 5 | CH_shi_1 | 18 | 36 | 3.32167e-52 |
| Selaginella moellendorffii | scaffold_77 | 5 | CH_smo_228 | 2 | 2 | 0.0000933707 |
| Selenicereus undatus | Scaffold_33678 | 5 | CH_sun_207 | 2 | 2 | 0.0000726639 |
| Trochodendron aralioides | group0 | 5 | CH_tar_539 | 2 | 2 | 0.0000600366 |
| Trifolium pratense | Tp57577_TGAC_v2_LG1 | 5 | CH_tpr_238 | 3 | 3 | 0.000000300841 |
| Utricularia gibba | unitig_0 | 5 | CH_ugi_35 | 3 | 3 | 0.0000000100982 |
| Vaccinium macrocarpon | chr5_Vaccinium_macrocarpon_Stevens_v1 | 5 | CH_vma_488 | 2 | 2 | 0.0000929238 |
| Vigna mungo | CM024072.1 | 5 | CH_vmu_20 | 6 | 7 | 1.24202e-18 |
| Amborella trichopoda | AmTr_v1.0_scaffold00058 | 6 | CH_atr_185 | 3 | 4 | 0.000000037865 |
| Brassica napus | C03 | 6 | CH_bna_991 | 2 | 2 | 0.000055685 |
| Brassica oleracea | C3 | 6 | CH_bol_518 | 2 | 2 | 0.0000326861 |
| Brassica rapa | A06 | 6 | CH_bra_103 | 3 | 3 | 0.00000000276471 |
| Camellia sinensis var. sinensis | Chr15 | 6 | CH_camsi_233 | 4 | 6 | 0.0000000000216935 |
| Capsicum annuum | PGAv.1.6.scaffold1305 | 6 | CH_can_716 | 2 | 2 | 0.000247831 |
| Cicer arietinum L. | Ca_LG5_v3 | 6 | CH_car_306 | 2 | 2 | 0.00023349 |
| Chara braunii | BFEA01000008 | 6 | CH_cbr_34 | 4 | 8 | 0.0000000000781408 |
| Coffea canephora | chr4 | 6 | CH_ccan_543 | 2 | 22 | 0.000234235 |
| Ceratophyllum demersum | 5 | 6 | CH_cde_242 | 2 | 2 | 0.0000789796 |
| Cardamine hirsuta | Chr5 | 6 | CH_chi_639 | 2 | 2 | 0.000207361 |
| Carica papaya | supercontig_76 | 6 | CH_cpa_139 | 3 | 5 | 0.000000135557 |
| Chenopodium quinoa | C_Quinoa_Scaffold_2689 | 6 | CH_cqu_862 | 2 | 2 | 0.000284293 |
| Chenopodium quinoa | C_Quinoa_Scaffold_3422 | 6 | CH_cqu_863 | 2 | 2 | 0.000284293 |
| Gossypium hirsutum | A09 | 6 | CH_ghi_879 | 2 | 2 | 0.0000801047 |
| Lupinus albus | Lalb_Chr08 | 6 | CH_lal_139 | 3 | 3 | 0.00000000413171 |
| Lonicera japonica | GWHAAZE00000009 | 6 | CH_lonja_233 | 4 | 5 | 0.00000000000322199 |
| Magnolia biondii | Chr10 | 6 | CH_mbi_358 | 3 | 3 | 0.0000000353808 |
| Petunia axillaris | Peaxi162Scf00009 | 6 | CH_pax_457 | 2 | 2 | 0.0000703556 |
| Prasinoderma coloniale | Chr2 | 6 | CH_pco_7 | 2 | 2 | 0.000279135 |
| Quercus lobata | 7 | 6 | CH_qlo_775 | 3 | 3 | 0.0000000799683 |
| Rhododendron simsii | chr02 | 6 | CH_rsi_465 | 3 | 3 | 0.000000524708 |
| Rhododendron simsii | chr06 | 6 | CH_rsi_613 | 3 | 8 | 0.0000293576 |
| Striga asiatica | scaffold90 | 6 | CH_sas_168 | 2 | 3 | 0.000187606 |
| Sequoiadendron giganteum | chr3 | 6 | CH_sgi_46 | 11 | 15 | 4.00924e-36 |
| Sapria himalayana | scaffold19_10581841 | 6 | CH_shi_1 | 18 | 36 | 3.32167e-52 |
| Selaginella moellendorffii | scaffold_77 | 6 | CH_smo_228 | 2 | 2 | 0.0000933707 |
| Selenicereus undatus | Scaffold_33678 | 6 | CH_sun_207 | 2 | 2 | 0.0000726639 |
| Trochodendron aralioides | group0 | 6 | CH_tar_539 | 2 | 2 | 0.0000600366 |
| Trifolium pratense | Tp57577_TGAC_v2_LG1 | 6 | CH_tpr_238 | 3 | 3 | 0.000000300841 |
| Utricularia gibba | unitig_0 | 6 | CH_ugi_35 | 3 | 3 | 0.0000000100982 |
| Vaccinium macrocarpon | chr5_Vaccinium_macrocarpon_Stevens_v1 | 6 | CH_vma_488 | 2 | 2 | 0.0000929238 |
| Vigna mungo | CM024072.1 | 6 | CH_vmu_20 | 6 | 7 | 1.24202e-18 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |