Functional clusters
Information
- Type InterPro
- Description E3 ubiquitin-protein ligase RNF170
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Camellia sinensis var. sinensis | Chr13 | 5 | CH_camsi_482 | 3 | 3 | 0.0000000630811 |
| Coffea canephora | chr2 | 5 | CH_ccan_437 | 2 | 7 | 0.0000766598 |
| Citrullus lanatus | CG_Chr08 | 5 | CH_cla_299 | 2 | 2 | 0.000266134 |
| Davidia involucrata | GWHABJS00000005 | 5 | CH_din_177 | 3 | 3 | 0.00000000375197 |
| Erythranthe guttata | scaffold_2 | 5 | CH_egut_252 | 3 | 3 | 0.000000031813 |
| Hydrangea macrophylla | Hma1.2p1_0217F.1 | 5 | CH_hma_659 | 2 | 2 | 0.000666519 |
| Lonicera japonica | GWHAAZE00000005 | 5 | CH_lonja_944 | 2 | 2 | 0.000179662 |
| Medicago truncatula | chr3 | 5 | CH_mtr_1097 | 2 | 2 | 0.000123259 |
| Rhododendron simsii | chr07 | 5 | CH_rsi_1041 | 2 | 2 | 0.000967961 |
| Sequoiadendron giganteum | HRSCAF_1 | 5 | CH_sgi_1830 | 2 | 3 | 0.0000487151 |
| Solanum lycopersicum | SL4.0ch01 | 5 | CH_sly_736 | 2 | 2 | 0.000176082 |
| Solanum pennellii | Spenn-ch01 | 5 | CH_spe_198 | 3 | 3 | 0.00000000296764 |
| Solanum tuberosum | ST4.03ch01 | 5 | CH_stu_724 | 2 | 2 | 0.000153736 |
| Vaccinium macrocarpon | chr12_Vaccinium_macrocarpon_Stevens_v1 | 5 | CH_vma_809 | 2 | 2 | 0.000929238 |
| Camellia sinensis var. sinensis | Chr13 | 6 | CH_camsi_482 | 3 | 3 | 0.0000000630811 |
| Coffea canephora | chr2 | 6 | CH_ccan_437 | 2 | 7 | 0.0000766598 |
| Citrullus lanatus | CG_Chr08 | 6 | CH_cla_299 | 2 | 2 | 0.000266134 |
| Davidia involucrata | GWHABJS00000005 | 6 | CH_din_177 | 3 | 3 | 0.00000000375197 |
| Erythranthe guttata | scaffold_2 | 6 | CH_egut_252 | 3 | 3 | 0.000000031813 |
| Hydrangea macrophylla | Hma1.2p1_0217F.1 | 6 | CH_hma_659 | 2 | 2 | 0.000666519 |
| Lonicera japonica | GWHAAZE00000005 | 6 | CH_lonja_944 | 2 | 2 | 0.000179662 |
| Medicago truncatula | chr3 | 6 | CH_mtr_1097 | 2 | 2 | 0.000123259 |
| Rhododendron simsii | chr07 | 6 | CH_rsi_1041 | 2 | 2 | 0.000967961 |
| Sequoiadendron giganteum | HRSCAF_1 | 6 | CH_sgi_1830 | 2 | 3 | 0.0000487151 |
| Solanum lycopersicum | SL4.0ch01 | 6 | CH_sly_736 | 2 | 2 | 0.000176082 |
| Solanum pennellii | Spenn-ch01 | 6 | CH_spe_198 | 3 | 3 | 0.00000000296764 |
| Solanum tuberosum | ST4.03ch01 | 6 | CH_stu_724 | 2 | 2 | 0.000153736 |
| Vaccinium macrocarpon | chr12_Vaccinium_macrocarpon_Stevens_v1 | 6 | CH_vma_809 | 2 | 2 | 0.000929238 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |