Functional clusters

Information

  • Type InterPro
  • Description tRNA ligase 1

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Anthoceros agrestis Sc2ySwM_117 5 CH_aag_52 4 6 0.00000000011631
Acer truncatum chr3 5 CH_acertr_623 2 2 0.000070497
Aquilegia oxysepala CHR03 5 CH_aox_435 2 2 0.000240597
Brassica carinata ChrC07 5 CH_bca_1597 2 2 0.000213764
Capsicum annuum PGAv.1.6.scaffold352 5 CH_can_715 2 2 0.000247831
Ceratophyllum demersum 5 5 CH_cde_285 2 3 0.000236929
Carica papaya supercontig_139 5 CH_cpa_547 2 4 0.000570342
Daucus carota DCARv2_Chr7 5 CH_dca_547 2 2 0.000191333
Davidia involucrata GWHABJS00000009 5 CH_din_712 2 3 0.000450094
Lonicera japonica GWHAAZE00000001 5 CH_lonja_1173 2 2 0.000598874
Lonicera japonica GWHAAZE00000002 5 CH_lonja_496 3 5 0.000000537911
Petunia axillaris Peaxi162Scf00389 5 CH_pax_456 2 2 0.0000703556
Papaver somniferum NC_039366.1 5 CH_pso_1040 2 2 0.000225294
Quercus lobata 11 5 CH_qlo_1315 3 29 0.0000583722
Sapria himalayana scaffold59_3208471 5 CH_shi_144 3 6 0.0000000980824
Trifolium pratense Tp57577_TGAC_v2_LG4 5 CH_tpr_702 2 2 0.000454184
Vaccinium macrocarpon chr7_Vaccinium_macrocarpon_Stevens_v1 5 CH_vma_205 3 3 0.000000129529
Vaccinium macrocarpon chr7_Vaccinium_macrocarpon_Stevens_v1 5 CH_vma_808 2 2 0.000929238
Vanilla planifolia CM028154.1 5 CH_vpl_424 2 2 0.000073888
Anthoceros agrestis Sc2ySwM_117 6 CH_aag_52 4 6 0.00000000011631
Acer truncatum chr3 6 CH_acertr_623 2 2 0.000070497
Aquilegia oxysepala CHR03 6 CH_aox_435 2 2 0.000240597
Brassica carinata ChrC07 6 CH_bca_1597 2 2 0.000213764
Capsicum annuum PGAv.1.6.scaffold352 6 CH_can_715 2 2 0.000247831
Ceratophyllum demersum 5 6 CH_cde_285 2 3 0.000236929
Carica papaya supercontig_139 6 CH_cpa_547 2 4 0.000570342
Daucus carota DCARv2_Chr7 6 CH_dca_547 2 2 0.000191333
Davidia involucrata GWHABJS00000009 6 CH_din_712 2 3 0.000450094
Fragaria x ananassa Fvb4-2 6 CH_fan_1022 2 2 0.000388576
Lonicera japonica GWHAAZE00000001 6 CH_lonja_1173 2 2 0.000598874
Lonicera japonica GWHAAZE00000002 6 CH_lonja_496 3 5 0.000000537911
Petunia axillaris Peaxi162Scf00389 6 CH_pax_456 2 2 0.0000703556
Papaver somniferum NC_039366.1 6 CH_pso_1040 2 2 0.000225294
Quercus lobata 11 6 CH_qlo_1315 3 29 0.0000583722
Sapria himalayana scaffold59_3208471 6 CH_shi_144 3 6 0.0000000980824
Trifolium pratense Tp57577_TGAC_v2_LG4 6 CH_tpr_702 2 2 0.000454184
Vaccinium macrocarpon chr7_Vaccinium_macrocarpon_Stevens_v1 6 CH_vma_205 3 3 0.000000129529
Vaccinium macrocarpon chr7_Vaccinium_macrocarpon_Stevens_v1 6 CH_vma_808 2 2 0.000929238
Vanilla planifolia CM028154.1 6 CH_vpl_424 2 2 0.000073888

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001