Functional clusters
Information
- Type InterPro
- Description Sodium/solute symporter superfamily
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Acer truncatum | chr8 | 5 | CH_acertr_253 | 4 | 4 | 0.0000000330755 |
| Acer truncatum | chr1 | 5 | CH_acertr_306 | 4 | 5 | 0.000000165246 |
| Aquilegia oxysepala | CHR01 | 5 | CH_aox_298 | 3 | 3 | 0.0000316074 |
| Aquilegia oxysepala | CHR01 | 5 | CH_aox_368 | 3 | 4 | 0.00012633 |
| Amborella trichopoda | AmTr_v1.0_scaffold00068 | 5 | CH_atr_111 | 6 | 15 | 0.000000000210013 |
| Brassica carinata | ChrC07 | 5 | CH_bca_1470 | 3 | 3 | 0.000139936 |
| Brassica napus | A07 | 5 | CH_bna_253 | 6 | 14 | 0.000000000627946 |
| Cannabis sativa | NC_044375.1 | 5 | CH_cansat_333 | 4 | 13 | 0.0000189838 |
| Cannabis sativa | NC_044378.1 | 5 | CH_cansat_419 | 3 | 4 | 0.000116209 |
| Corylus avellana | 1 | 5 | CH_cav_317 | 4 | 6 | 0.00000204923 |
| Coffea canephora | chr2 | 5 | CH_ccan_324 | 3 | 11 | 0.0000182197 |
| Carya illinoinensis | Chr14 | 5 | CH_cil_369 | 4 | 5 | 0.000000361422 |
| Carya illinoinensis | Chr13 | 5 | CH_cil_515 | 4 | 11 | 0.0000237184 |
| Davidia involucrata | GWHABJS00000009 | 5 | CH_din_442 | 3 | 3 | 0.000039996 |
| Eucalyptus grandis | Chr07 | 5 | CH_egr_816 | 4 | 8 | 0.000000997586 |
| Eutrema salsugineum | scaffold_4 | 5 | CH_esa_353 | 3 | 3 | 0.0000794959 |
| Fragaria vesca | Fvb7 | 5 | CH_fve_250 | 6 | 25 | 0.00000000907662 |
| Gossypium hirsutum | A08 | 5 | CH_ghi_294 | 5 | 5 | 0.000000000220915 |
| Gossypium hirsutum | D08 | 5 | CH_ghi_340 | 5 | 6 | 0.00000000132414 |
| Gossypium hirsutum | A02 | 5 | CH_ghi_925 | 3 | 3 | 0.000148031 |
| Gossypium hirsutum | D12 | 5 | CH_ghi_926 | 3 | 3 | 0.000148031 |
| Glycine max | Gm11 | 5 | CH_gma_528 | 4 | 10 | 0.0000246865 |
| Lotus japonicus | chr6 | 5 | CH_lja_219 | 5 | 13 | 0.000000383246 |
| Magnolia biondii | Chr02 | 5 | CH_mbi_1062 | 3 | 6 | 0.000350396 |
| Malus domestica | Chr02 | 5 | CH_mdo_416 | 5 | 10 | 0.000000040539 |
| Manihot esculenta | Chromosome18 | 5 | CH_mes_649 | 3 | 5 | 0.00047106 |
| Medicago truncatula | chr7 | 5 | CH_mtr_605 | 5 | 14 | 0.000000274437 |
| Punica granatum | NC_045134.1 | 5 | CH_pgr_385 | 3 | 3 | 0.0000308611 |
| Punica granatum | NC_045128.1 | 5 | CH_pgr_581 | 3 | 6 | 0.000615799 |
| Pisum sativum | chr5LG3 | 5 | CH_psa_417 | 3 | 3 | 0.0000503716 |
| Papaver somniferum | NC_039362.1 | 5 | CH_pso_249 | 8 | 52 | 0.0000000000626214 |
| Papaver somniferum | NW_020620492.1 | 5 | CH_pso_86 | 8 | 11 | 1.42197e-17 |
| Quercus lobata | 7 | 5 | CH_qlo_1317 | 3 | 3 | 0.000060696 |
| Quercus lobata | 1 | 5 | CH_qlo_1528 | 3 | 4 | 0.000242575 |
| Quercus lobata | 1 | 5 | CH_qlo_598 | 6 | 19 | 0.00000000207342 |
| Simmondsia chinensis | GWHAASQ00000010 | 5 | CH_sci_422 | 3 | 4 | 0.000337594 |
| Schrenkiella parvula | ch1-1 | 5 | CH_spa_257 | 3 | 3 | 0.0000991265 |
| Trochodendron aralioides | group7 | 5 | CH_tar_735 | 3 | 5 | 0.000294577 |
| Trifolium pratense | Tp57577_TGAC_v2_scaf_467 | 5 | CH_tpr_453 | 3 | 3 | 0.0000562573 |
| Vaccinium macrocarpon | chr4_Vaccinium_macrocarpon_Stevens_v1 | 5 | CH_vma_405 | 3 | 3 | 0.0000775099 |
| Acer truncatum | chr8 | 6 | CH_acertr_253 | 4 | 4 | 0.0000000330755 |
| Acer truncatum | chr1 | 6 | CH_acertr_306 | 4 | 5 | 0.000000165246 |
| Aquilegia oxysepala | CHR01 | 6 | CH_aox_298 | 3 | 3 | 0.0000316074 |
| Aquilegia oxysepala | CHR01 | 6 | CH_aox_368 | 3 | 4 | 0.00012633 |
| Amborella trichopoda | AmTr_v1.0_scaffold00068 | 6 | CH_atr_111 | 6 | 15 | 0.000000000210013 |
| Brassica carinata | ChrC07 | 6 | CH_bca_1470 | 3 | 3 | 0.000139936 |
| Brassica napus | A07 | 6 | CH_bna_253 | 6 | 14 | 0.000000000627946 |
| Cannabis sativa | NC_044375.1 | 6 | CH_cansat_333 | 4 | 13 | 0.0000189838 |
| Cannabis sativa | NC_044378.1 | 6 | CH_cansat_419 | 3 | 4 | 0.000116209 |
| Corylus avellana | 1 | 6 | CH_cav_317 | 4 | 6 | 0.00000204923 |
| Coffea canephora | chr2 | 6 | CH_ccan_324 | 3 | 11 | 0.0000182197 |
| Carya illinoinensis | Chr14 | 6 | CH_cil_369 | 4 | 5 | 0.000000361422 |
| Carya illinoinensis | Chr13 | 6 | CH_cil_515 | 4 | 11 | 0.0000237184 |
| Davidia involucrata | GWHABJS00000009 | 6 | CH_din_442 | 3 | 3 | 0.000039996 |
| Eucalyptus grandis | Chr07 | 6 | CH_egr_816 | 4 | 8 | 0.000000997586 |
| Eutrema salsugineum | scaffold_4 | 6 | CH_esa_353 | 3 | 3 | 0.0000794959 |
| Fragaria x ananassa | Fvb3-1 | 6 | CH_fan_821 | 4 | 12 | 0.0000965176 |
| Fragaria vesca | Fvb7 | 6 | CH_fve_250 | 6 | 25 | 0.00000000907662 |
| Gossypium hirsutum | A08 | 6 | CH_ghi_294 | 5 | 5 | 0.000000000220915 |
| Gossypium hirsutum | D08 | 6 | CH_ghi_340 | 5 | 6 | 0.00000000132414 |
| Gossypium hirsutum | A02 | 6 | CH_ghi_925 | 3 | 3 | 0.000148031 |
| Gossypium hirsutum | D12 | 6 | CH_ghi_926 | 3 | 3 | 0.000148031 |
| Glycine max | Gm11 | 6 | CH_gma_528 | 4 | 10 | 0.0000246865 |
| Lotus japonicus | chr6 | 6 | CH_lja_219 | 5 | 13 | 0.000000383246 |
| Magnolia biondii | Chr02 | 6 | CH_mbi_1062 | 3 | 6 | 0.000350396 |
| Malus domestica | Chr02 | 6 | CH_mdo_416 | 5 | 10 | 0.000000040539 |
| Manihot esculenta | Chromosome18 | 6 | CH_mes_649 | 3 | 5 | 0.00047106 |
| Medicago truncatula | chr7 | 6 | CH_mtr_605 | 5 | 14 | 0.000000274437 |
| Punica granatum | NC_045134.1 | 6 | CH_pgr_385 | 3 | 3 | 0.0000308611 |
| Punica granatum | NC_045128.1 | 6 | CH_pgr_581 | 3 | 6 | 0.000615799 |
| Pisum sativum | chr5LG3 | 6 | CH_psa_417 | 3 | 3 | 0.0000503716 |
| Papaver somniferum | NC_039362.1 | 6 | CH_pso_249 | 8 | 52 | 0.0000000000626214 |
| Papaver somniferum | NW_020620492.1 | 6 | CH_pso_86 | 8 | 11 | 1.42197e-17 |
| Quercus lobata | 7 | 6 | CH_qlo_1317 | 3 | 3 | 0.000060696 |
| Quercus lobata | 1 | 6 | CH_qlo_1528 | 3 | 4 | 0.000242575 |
| Quercus lobata | 1 | 6 | CH_qlo_598 | 6 | 19 | 0.00000000207342 |
| Simmondsia chinensis | GWHAASQ00000010 | 6 | CH_sci_422 | 3 | 4 | 0.000337594 |
| Schrenkiella parvula | ch1-1 | 6 | CH_spa_257 | 3 | 3 | 0.0000991265 |
| Trochodendron aralioides | group7 | 6 | CH_tar_735 | 3 | 5 | 0.000294577 |
| Trifolium pratense | Tp57577_TGAC_v2_scaf_467 | 6 | CH_tpr_453 | 3 | 3 | 0.0000562573 |
| Vaccinium macrocarpon | chr4_Vaccinium_macrocarpon_Stevens_v1 | 6 | CH_vma_405 | 3 | 3 | 0.0000775099 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |